DRSC/TRiP Functional Genomics Resources

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Protein Alignment Elk and Cnga4

DIOPT Version :9

Sequence 1:NP_477009.1 Gene:Elk / 37047 FlyBaseID:FBgn0011589 Length:1284 Species:Drosophila melanogaster
Sequence 2:NP_445948.2 Gene:Cnga4 / 85258 RGDID:619844 Length:575 Species:Rattus norvegicus


Alignment Length:633 Identity:153/633 - (24%)
Similarity:262/633 - (41%) Gaps:143/633 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   223 EKGGVKTKLKLGNNFMHSTEA--PFPEYKTQSIKKSRLILPHYGVFKGIWDWVILVATF---YVA 282
            :.|.|||           ||:  |.|       .|:|..||........:.|.:....|   |..
  Rat     3 QDGKVKT-----------TESTPPAP-------TKARKWLPVLDPSGDYYYWWLNTMVFPIMYNL 49

  Fly   283 LMVPYNAAFAKADRQTKVS----DVIVEALFIVDILLNFRTTFVSRKGEVVSNSKQIAINYLRGW 343
            ::|...|.|........|:    |...:.|:::||.:.|.|.|: .:|.:|.:...||..|:|.|
  Rat    50 IIVVCRACFPDLQHSYLVAWFVLDYTSDLLYLLDIGVRFHTGFL-EQGILVVDKGMIASRYVRTW 113

  Fly   344 -FALDLLAALPFDHLYASDLYDGEDSHIHLVKLTRLLRLARLLQKIDRYSQHTA-----MILTLL 402
             |.|||.:.:|.|..|..     ...||..::|.|.||:.||.:..||....||     .|..|:
  Rat   114 SFLLDLASLVPTDAAYVQ-----LGPHIPTLRLNRFLRVPRLFEAFDRTETRTAYPNAFRIAKLM 173

  Fly   403 MFSFTLAAHWLACIWYVIAVKEY------EW-FPE-SNIGWLQLLAERKNASVAILTTAETYSTA 459
            ::.| :..||.:|:::  |:..|      .| :|: :..|:.:|..:              |..:
  Rat   174 LYIF-VVIHWNSCLYF--ALSRYLGFGRDAWVYPDPAQPGFERLRRQ--------------YLYS 221

  Fly   460 LYFTFTSLTSVGFGNVSANTTAEKVFTIIMMLIGALMHAVVFGNVTAIIQRMYSRRSLYESKWRD 524
            .||:...||:|| .....:...|.:|.:...|:..:..|.:.|:::::|..|.:..:.:......
  Rat   222 FYFSTLILTTVG-DTPLPDREEEYLFMVGDFLLAVMGFATIMGSMSSVIYNMNTADAAFYPDHAL 285

  Fly   525 LKDFVALHNMPKELKQRIEDYF---QTSWSLSHGIDIYETLREFPEELRGDVSMHLHREIL-QLP 585
            :|.::.|.::.|.|::|:.|::   |.:..:::.:.|   |:..||.||.:|::.:|...| ::.
  Rat   286 VKKYMKLQHVNKRLERRVIDWYQHLQINKKMTNEVAI---LQHLPERLRAEVAVSVHLSTLSRVQ 347

  Fly   586 IFEAASQGCLKLLSLHIKTNFCAPGEYLIHKGDALNYIYYLCNGSMEVIKDDMVV--AILGKGDL 648
            ||:......|:.|.|.::....:||||:..|||....:|.:..|.:.|:.||.|.  |:||.|..
  Rat   348 IFQNCEASLLEELVLKLQPQTYSPGEYVCRKGDIGREMYIIREGQLAVVADDGVTQYAVLGAGLY 412

  Fly   649 VG--SDINVHLVATSNGQMTATTNSAGQDVVVRSSSDIKALTYCDLKCIHMGGLVEVLRLYPEYQ 711
            .|  |.||:      .|.|:..          |.:::||:|.|.||.|:....|.|||..||:.|
  Rat   413 FGEISIINI------KGNMSGN----------RRTANIKSLGYSDLFCLSKEDLREVLSEYPQAQ 461

  Fly   712 --------------------QQFANDIQHDLTCNLREGYENQDSDIGPSF--------------- 741
                                .:.|.....:.|.:..:|.:.|..|:...|               
  Rat   462 AVMEEKGREILLKMNKLDVNAEAAEIALQEATESRLKGLDQQLDDLQTKFARLLAELESSALKIA 526

  Fly   742 -------------PLPSISEDDENREEAEEGGKGEKENGGGPPSGASP 776
                         |:|   ||....::..|.|:|..::|.|......|
  Rat   527 YRIERLEWQTREWPMP---EDMGEADDEAEPGEGTSKDGEGKAGQEGP 571

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ElkNP_477009.1 PAS 36..132 CDD:238075
PAS_3 41..129 CDD:285623
Ion_trans 285..516 CDD:278921 63/248 (25%)
Ion_trans_2 <455..510 CDD:285168 13/54 (24%)
Crp 583..>650 CDD:223736 22/68 (32%)
CAP_ED 586..715 CDD:237999 43/152 (28%)
Cnga4NP_445948.2 Ion_trans 58..273 CDD:278921 60/238 (25%)
P-loop_NTPase 116..>174 CDD:304359 20/62 (32%)
IQ-type. /evidence=ECO:0000250 292..302 3/9 (33%)
Crp 342..>519 CDD:223736 50/192 (26%)
CAP_ED 348..464 CDD:237999 43/131 (33%)
CLZ 464..535 CDD:293134 6/70 (9%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 537..575 10/38 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166338701
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.930

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