DRSC/TRiP Functional Genomics Resources

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Protein Alignment Elk and cnga3a

DIOPT Version :9

Sequence 1:NP_477009.1 Gene:Elk / 37047 FlyBaseID:FBgn0011589 Length:1284 Species:Drosophila melanogaster
Sequence 2:XP_005166141.1 Gene:cnga3a / 567242 ZFINID:ZDB-GENE-090611-2 Length:765 Species:Danio rerio


Alignment Length:463 Identity:112/463 - (24%)
Similarity:210/463 - (45%) Gaps:63/463 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   270 WDWVILVATFYVALMVPYNAAFAKADRQTK----VSDVIVEALFIVDILLNFRTTFVSRKGEVVS 330
            |..:|....||..:|:...|.|.:......    |.|...:.::.:|..:..||.|: .:|.:|.
Zfish   244 WLSIIAAPVFYNLMMLVTRACFNELQNTYTILWIVLDYTSDVIYYMDTFVRSRTGFL-EQGLLVK 307

  Fly   331 NSKQIAINYLR-GWFALDLLAALPFDHLYASDLYDGEDSHIHLVKLTRLLRLARLLQKIDRYSQH 394
            :||::..||.. ..|..|:::.:|.|.......::..:     ::..||.::|||.:..||....
Zfish   308 DSKKLINNYRTIPQFKYDMISMIPTDLFMLKVGFNNPE-----LRFNRLFKMARLFEFFDRTETR 367

  Fly   395 T-----AMILTLLMFSFTLAAHWLACIWYVIAVKEYEWFPESNIG-----WLQLLAERKNASVAI 449
            |     ..|..|:::...: .||.|||::.|:         ..||     |:..........   
Zfish   368 TNYPNIFRISNLVLYILVI-IHWNACIFFAIS---------KTIGFGTDTWVYPNISHPEYG--- 419

  Fly   450 LTTAETYSTALYFTFTSLTSVGFGNVSANT-----TAEKVFTIIMMLIGALMHAVVFGNVTAIIQ 509
             ..|..|...||::..:||::|      .|     ..|.:|.::..|||.|:.|.:.|||.|:|.
Zfish   420 -RLARKYIYCLYWSTLTLTTIG------ETPPPVRDIEYLFVVMDFLIGVLIFATIVGNVGAMIS 477

  Fly   510 RMYSRRSLYESKWRDLKDFVALHNMPKELKQRIEDYFQTSWSLSHGIDIYETLREFPEELRGDVS 574
            .|.:.|:.:::|...:|.::....:.|:|:.|:..:|...|:.....|..|.|:..|::|:.:::
Zfish   478 NMNASRAEFQAKIDSIKQYMQFRKVSKDLEARVIKWFDYLWTEKKTCDEKEVLKNLPDKLKAEIA 542

  Fly   575 MHLHREIL-QLPIFEAASQGCLKLLSLHIKTNFCAPGEYLIHKGDALNYIYYLCNGSMEVIKDDM 638
            :::|.:.| ::.||:....|.|..|.|.::....:||:|:..|||....:|.:..|.:.|:.||.
Zfish   543 INVHLDTLKKVRIFQDCEAGLLIELVLKLQPQVFSPGDYICKKGDIGREMYIIKEGKLAVVADDG 607

  Fly   639 VV--AILGKGDLVGSDINVHLVATSNGQMTATTNSAGQDVVVRSSSDIKALTYCDLKCIHMGGLV 701
            :.  .:|..|...| :|::         :....:.||.    |.:::|:::.|.||..:....||
Zfish   608 ITQFVVLSDGAYFG-EISI---------LGIKGSKAGN----RRTANIRSVGYSDLFALSKDDLV 658

  Fly   702 EVLRLYPE 709
            |.|..||:
Zfish   659 EALTEYPD 666

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ElkNP_477009.1 PAS 36..132 CDD:238075
PAS_3 41..129 CDD:285623
Ion_trans 285..516 CDD:278921 58/250 (23%)
Ion_trans_2 <455..510 CDD:285168 19/59 (32%)
Crp 583..>650 CDD:223736 19/68 (28%)
CAP_ED 586..715 CDD:237999 34/126 (27%)
cnga3aXP_005166141.1 Ion_trans 272..483 CDD:278921 56/236 (24%)
Crp 549..>671 CDD:223736 35/132 (27%)
CAP_ED 555..671 CDD:237999 34/126 (27%)
CLZ 671..741 CDD:293134
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170578323
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.840

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