DRSC/TRiP Functional Genomics Resources

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Protein Alignment Elk and Cngb3

DIOPT Version :10

Sequence 1:NP_477009.1 Gene:Elk / 37047 FlyBaseID:FBgn0011589 Length:1284 Species:Drosophila melanogaster
Sequence 2:NP_001258167.1 Gene:Cngb3 / 500418 RGDID:1565364 Length:690 Species:Rattus norvegicus


Alignment Length:550 Identity:108/550 - (19%)
Similarity:223/550 - (40%) Gaps:106/550 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   206 RRRSRAVLYQ---LSGHYKPEKGGVKTKLKLGNNFMHSTE--------------------APFPE 247
            |.|.|...|:   ..|...||       |:..::...||:                    .|..|
  Rat   130 RMRERTAFYKRTLTEGENSPE-------LEASSHTATSTDISPRQEINSKPKEHHHKLQRVPVKE 187

  Fly   248 YKTQSIKKSRLILPHYGVFKGIWDWVILVATFYVALMVPYNAAFAKADRQTK----VSDVIVEAL 308
            | .:|::..|.|..:......:|..::.:|..:...::|....|.......:    ::|:|.:.:
  Rat   188 Y-LRSMRLPRSIDSYTDRIYLLWLLLVTIAYNWNCWLLPVRLVFPCQTPDNRNYWIITDIICDII 251

  Fly   309 FIVDILL-NFRTTFVSRKGEVVSNSKQIAINYLRGW-FALDLLAALPFDHLYASDLYDGEDSHIH 371
            ::.|||| ..|..|| |.||::.:|.::..:|.... |.:|:.:.|||:.||   ::.|.:.   
  Rat   252 YLGDILLIQPRLQFV-RGGEIIVDSNELKRHYRSSTKFQMDVASLLPFEVLY---IFFGVNP--- 309

  Fly   372 LVKLTRLLR----------LARLLQK--IDRYSQHTAMILTLLMFSFTLAAHWLACIWYVIAVKE 424
            :.:..|:|:          |..::.:  :.|..:.|..:|.||        |..||::|  ...:
  Rat   310 IFRTNRILKYTSFFEFNHHLESIMDRAYVYRIIRTTGYLLFLL--------HINACVYY--WASD 364

  Fly   425 YEWFPESNIG---WLQLLAERKNASVAILTTAETYSTALYFTFTSLTSVGFGNVSANTTAEKVFT 486
            ||     .||   |:.      |..      ...|....|:...:|.::| |.....|:.|.||.
  Rat   365 YE-----GIGSTKWVY------NGE------GNKYLRCFYWAVRTLITIG-GLPEPQTSFEIVFQ 411

  Fly   487 IIMMLIGALMHAVVFGNVTAIIQRMYSRRSLYESKWRDLKDFVALHNMPKELKQRIEDYFQTSWS 551
            ::....|..:.:.:.|.:..:|....:.::.:......:..::..:::|:..:.|:..:.:.:|.
  Rat   412 LLNFFSGVFVFSSLIGQMRDVIGAATANQNNFHVCMDHIIAYMNKYSIPQSTQHRVRTWLEYTWH 476

  Fly   552 LSHGIDIYETLREFPEELRGDVSMHLHREIL-QLPIFEAASQGCLKLLSLHIKTNFCAPGEYLIH 615
            ....:|....|...|..::..|::.::..|: ::.:|:......:..|.|.:|:....||:::..
  Rat   477 SQRILDESNLLETLPTAMQLSVAIDINFNIIDKVELFKGCDTQMIYDLLLRLKSTIYLPGDFVCK 541

  Fly   616 KGDALNYIYYLCNGSMEVI--KDDMVVAILGKGDLVGSDINVHLVATSNGQMTATTNSAGQDVVV 678
            ||:....:|.:.:|.::|:  .|...|.:..|...|..:|:  |:|...|.              
  Rat   542 KGEIGKEMYIIKHGEVQVLGGPDGAQVLVTLKAGAVFGEIS--LLAKGGGN-------------- 590

  Fly   679 RSSSDIKALTYCDLKCIHMGGLVEVLRLYP 708
            |.::|:.|..:.:|..:....|.|:|..||
  Rat   591 RRTADVVAHGFANLLTLDKKTLQEILLHYP 620

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ElkNP_477009.1 PAS_9 40..133 CDD:463873
PLN03192 270..>650 CDD:215625 78/403 (19%)
cNMP 586..716 CDD:197516 27/124 (22%)
Cngb3NP_001258167.1 PLN03192 198..>584 CDD:215625 81/422 (19%)
CAP_ED 512..620 CDD:237999 26/123 (21%)
Blue background indicates that the domain is not in the aligned region.

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