DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Elk and kcnh6a

DIOPT Version :9

Sequence 1:NP_477009.1 Gene:Elk / 37047 FlyBaseID:FBgn0011589 Length:1284 Species:Drosophila melanogaster
Sequence 2:NP_998002.1 Gene:kcnh6a / 405763 ZFINID:ZDB-GENE-040702-5 Length:1186 Species:Danio rerio


Alignment Length:1308 Identity:384/1308 - (29%)
Similarity:586/1308 - (44%) Gaps:367/1308 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MPARKGLLAPQNTFLDTIATRFDGTHSNFVLGNAQANGNPIVYCSDGFVDLTGYSRAQIMQKGCS 65
            ||.|:|.:|.|||:||||..:|||.:..|::.|||.....|:||::||..:.|:|||:|||:.|:
Zfish     1 MPVRRGHVALQNTYLDTIIRKFDGQNRKFLIANAQMKNCGIIYCNEGFCQMFGFSRAEIMQQSCT 65

  Fly    66 CHFLYGPDTKEEHKQQIEKSLSNKMELKLEVIFYKKEGAPFWCLFDIVPIKNEKRDVVLFLASHK 130
            |.||.||.|.:....|:.::|....|.|:|:::|.|||....||.|::|:|||:..|::|:.:.:
Zfish    66 CQFLVGPGTMKSALGQLAQALLGSEERKVEILYYSKEGTCRPCLIDVIPVKNEEGVVIMFILNFQ 130

  Fly   131 DITHTKMLEMNVNEECDSVFALTAALLGARFRAGSNAGM------LGLGGLPGL----------- 178
            ::....|.:..:.:.          :..:..|||....|      |.:...|.|           
Zfish   131 ELLDPSMKKGGLKQR----------MANSWLRAGQRRRMHLRMPSLRVKRQPSLPKDHFEGVVVD 185

  Fly   179 ----------------------------------------------------GGP---------- 181
                                                                .||          
Zfish   186 YLQPSHEEVALKDLQMSPDSCLKSETQALIQQTPSSCELSPPPSRPSDRLEPSGPLLKHSHSRES 250

  Fly   182 ------AASDGDTEAG-------EGNNLDVPAGCNMGRRRSRAVLYQLS---------------- 217
                  |:|..|.:..       :.:||:..:..::.|.|:...:.|::                
Zfish   251 MHSLRRASSLHDIDGMRDQWSDLKPSNLNSTSDSDLMRHRTIGRIPQVTISFGSDRLRPPSPTEI 315

  Fly   218 -----GHYKPEKGGVKTK-------LKLGNNFMHSTEAPFPEYKTQSIKKSRLILPHYGVFKGIW 270
                 ...|.....|..|       |.||.:.:       ||||.|:.:..:..:.||..||.:|
Zfish   316 EIIAPSKIKDRSQNVSEKVTQVTQVLSLGADVL-------PEYKLQAPRIHKWTILHYSPFKAVW 373

  Fly   271 DWVILVATFYVALMVPYNAAFAKADRQTK-------------VSDVIVEALFIVDILLNFRTTFV 322
            ||:||:...|.|:..||:|||...:::.:             |.|::|:.:||:|||:|||||:|
Zfish   374 DWIILLLVLYTAVFTPYSAAFLLNEQEDERRRTCGYTCNPLNVVDLVVDVMFIIDILINFRTTYV 438

  Fly   323 SRKGEVVSNSKQIAINYLRGWFALDLLAALPFDHLYASDLYDGED-----SHIHLVKLTRLLRLA 382
            :...|||||..:||.:|.:|||.:|::||:|||.|.   ...|.|     :.|.|:|..|||||.
Zfish   439 NHNDEVVSNPARIAQHYFKGWFLIDIVAAIPFDLLI---FRSGSDEPQTTTLIGLLKTARLLRLV 500

  Fly   383 RLLQKIDRYSQHTAMILTLLMFSFTLAAHWLACIWYVIAVKEYEWFPE---SNIGWLQLLAER-- 442
            |:.:|:||||::.|.:|.|||.:|.|.|||||||||.|...|......   ..||||..||::  
Zfish   501 RVARKLDRYSEYGAAVLFLLMCTFALIAHWLACIWYAIGNMERTSSARIGGMKIGWLDNLADQIG 565

  Fly   443 ----KNASVAILTTAETYSTALYFTFTSLTSVGFGNVSANTTAEKVFTIIMMLIGALMHAVVFGN 503
                .:.|.:..:..:.|.|||||||:|||||||||||.||..||:|:|.:||||:||:|.:|||
Zfish   566 KQYNDSNSFSGPSIKDKYVTALYFTFSSLTSVGFGNVSPNTNPEKIFSICVMLIGSLMYASIFGN 630

  Fly   504 VTAIIQRMYSRRSLYESKWRDLKDFVALHNMPKELKQRIEDYFQTSWSLSHGIDIYETLREFPEE 568
            |:|||||:||..:.|.::...:|:|:..|.:|..|:||:|:|||.:|..::|||:...|:.|||.
Zfish   631 VSAIIQRLYSGTARYHTQMLRVKEFIRFHQIPGGLRQRLEEYFQHAWPYTNGIDMNAVLKGFPEC 695

  Fly   569 LRGDVSMHLHREILQ-LPIFEAASQGCLKLLSLHIKTNFCAPGEYLIHKGDALNYIYYLCNGSME 632
            |:.|:.:||:|.:|| ...|..||:|||:.|::..:|....||:.|:|.||.|..:|::..||:|
Zfish   696 LQADICLHLNRSLLQSCKAFRGASKGCLRALAMRFRTTHAPPGDTLVHSGDVLTALYFISRGSIE 760

  Fly   633 VIKDDMVVAILGKGDLVGSDINVHLVATSNGQMTATTNSAGQDVVVRSSSDIKALTYCDLKCIHM 697
            :::||:|||||||.|:.|..|:::.             ..|     :||:|::|||||||..|..
Zfish   761 ILRDDVVVAILGKNDIFGEPISLYA-------------RPG-----KSSADVRALTYCDLHKILR 807

  Fly   698 GGLVEVLRLYPEYQQQFANDIQHDLTCNLRE------GYENQDSDIGPSFPLPSISEDDENREEA 756
            ..|:|||.:||::...|.:::  ::|.|||:      ...::|||.|...|....:....||.: 
Zfish   808 DDLLEVLDMYPDFSDNFWSNL--EITFNLRDVDRIMHPTPSEDSDCGYRRPRHRRNPLRRNRPD- 869

  Fly   757 EEGGKGEKENGGG--PPSGASPLHNISNSPLHATRSPLLGMGSPRNQRLHQRGRSLITLRETNKR 819
                 |...:|..  |....||:.|...:...:....|...|||                     
Zfish   870 -----GMDRDGMDTYPVQPCSPVGNHRGAIPLSQWDELCSDGSP--------------------- 908

  Fly   820 HRTLNAACSLDRGSFEEPEPLEEEQSSGGKRPSLERLDSQVSTLHQDVAQLSAEVR----NAISA 880
                   .||  .|.|:.:||...|.                    |:..|..|::    :|:|.
Zfish   909 -------ASL--SSEEDMKPLVSGQG--------------------DMYSLGTEMQEFSPSAVSL 944

  Fly   881 LQEMTFTSNAMT-----SHSSLKFPPARSIPNISGVAGTRSGVAVEHGLMGGVLAAAELAAMQRS 940
            :.....|::||.     :|.....|     .|||||....|.           ..|:|.:..||.
Zfish   945 MPSAHSTASAMAGPLTGAHQYTAAP-----LNISGVYSYLSD-----------RRASEYSESQRR 993

  Fly   941 SS--------HPPEVWGRDVQLPTSNTASSKAPSPVEPKKTMTSRSSQTDFYRIDFPTFERFVLA 997
            ||        |.|.|..|..||                       .::.:..:......|..:.|
Zfish   994 SSAVQACYHHHSPCVGDRPNQL-----------------------QARLELLQSQLNRLETRMTA 1035

  Fly   998 NPRLVLGLLGIEPAIKNEMDLLQQKQTLQISPLNTIDECVSP------------------SDHNL 1044
            :..::|             .|||:    |::|:......|||                  :.||.
Zfish  1036 DINVIL-------------QLLQR----QMAPVPPAYSAVSPDPLAHPVPPAHPTSLYTTAAHNT 1083

  Fly  1045 ASSKERLITSSAVPTPGRIYPPLDD--ENSNDFRWTMKHSASHHSCCKSTDAL-LSPEE------ 1100
            ..|.:  ||.::  :||: .|.:|.  |.|.|     ..|:..|....|||.: :|||.      
Zfish  1084 TPSLQ--ITDAS--SPGK-SPDVDSLKEKSPD-----SLSSGIHLTVASTDTMSMSPETELSVPS 1138

  Fly  1101 -----QPP 1103
                 |||
Zfish  1139 AGPLLQPP 1146

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ElkNP_477009.1 PAS 36..132 CDD:238075 37/95 (39%)
PAS_3 41..129 CDD:285623 37/87 (43%)
Ion_trans 285..516 CDD:278921 121/257 (47%)
Ion_trans_2 <455..510 CDD:285168 39/54 (72%)
Crp 583..>650 CDD:223736 30/67 (45%)
CAP_ED 586..715 CDD:237999 49/128 (38%)
kcnh6aNP_998002.1 PAS 29..132 CDD:238075 41/102 (40%)
PAS_9 29..130 CDD:290162 41/100 (41%)
Ion_trans_2 <583..637 CDD:285168 39/53 (74%)
CAP_ED 714..821 CDD:237999 49/124 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170578361
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0498
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D247304at2759
OrthoFinder 1 1.000 - - FOG0000148
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X71
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
76.750

Return to query results.
Submit another query.