DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Elk and Hcn3

DIOPT Version :9

Sequence 1:NP_477009.1 Gene:Elk / 37047 FlyBaseID:FBgn0011589 Length:1284 Species:Drosophila melanogaster
Sequence 2:NP_446137.1 Gene:Hcn3 / 114245 RGDID:620691 Length:780 Species:Rattus norvegicus


Alignment Length:887 Identity:203/887 - (22%)
Similarity:345/887 - (38%) Gaps:217/887 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   181 PAASDGD--TEAGEGNNLDVPAGCNMGRRRSRAVLYQLSGHYKPEKGGVKTKLKLG-------NN 236
            ||..||:  |.|.|    ..||.....|..|..|         ||......:.:||       |.
  Rat     7 PAVGDGEAATPARE----TPPAAPAQARAASGGV---------PESAPEPKRRQLGTLLQPTVNK 58

  Fly   237 FMHSTEAPFPEYKTQSIKKSRL------ILPHYGVFKGIWDWVILVATFYVALMVPYNAAFAKAD 295
            |   :...|..:|...|::.|:      |:..|..|:..||.::|:......:::|....|.|.:
  Rat    59 F---SLRVFGSHKAVEIEQERVKSAGAWIIHPYSDFRFYWDLIMLLLMVGNLIVLPVGITFFKEE 120

  Fly   296 RQTK--VSDVIVEALFIVDILLNFRTTFVSRKG-EVVSNSKQIAINYLRGWFALDLLAALPFDHL 357
            ....  |.:|:.:..|::|::|||||..|..:| |::...:.|...|||.||.:||::::|.|::
  Rat   121 NSPPWIVFNVLSDTFFLLDLVLNFRTGIVVEEGAEILLAPRAIRTRYLRTWFLVDLISSIPVDYI 185

  Fly   358 Y-ASDLYDGEDSHIH-------------LVKLTRLLRLARLLQKIDRYSQHTAMILTL------- 401
            : ..:|....|:.::             ::.|.|||||:||::.:.::.:...|...|       
  Rat   186 FLVVELEPRLDAEVYKTARALRIVRFTKILSLLRLLRLSRLIRYMHQWEEIFHMTYDLASAVVRI 250

  Fly   402 --LMFSFTLAAHWLACIWYVIAVKEYEWFPES---------NIGWLQLLAERKNASVAILTTAET 455
              |:....|..||..|:.:::.:  .:.||..         |..|                 ...
  Rat   251 FNLIGMMLLLCHWDGCLQFLVPM--LQDFPSDCWVSMNRMVNHSW-----------------GRQ 296

  Fly   456 YSTALYFTFTSLTSVGFGNVSANTTAEKVFTIIMMLIGALMHAVVFGNVTAIIQRMYSRRSLYES 520
            ||.||:...:.:..:|:|..:.....:...|::.|::||..:|:..|:.||:||.:.|.|..|:.
  Rat   297 YSHALFKAMSHMLCIGYGQQAPVGMPDVWLTMLSMIVGATCYAMFIGHATALIQSLDSSRRQYQE 361

  Fly   521 KWRDLKDFVALHNMPKELKQRIEDYFQTSWSLSHGIDIYETLREFPEE-LRGDVSMHLHREIL-- 582
            |::.::.:::.|.:|.:.:|||.:|::..:   .|       :.|.|| :.|::|..|..||:  
  Rat   362 KYKQVEQYMSFHKLPADTRQRIHEYYEHRY---QG-------KMFDEESILGELSEPLREEIINF 416

  Fly   583 -------QLPIFEAASQGCLKLLSLHIKTNFCAPGEYLIHKGDALNYIYYLCNGSMEVIKDDMVV 640
                   .:|:|..|....:..:...::.....||:.::.:|.....:|::.:|.:.|:......
  Rat   417 TCRGLVAHMPLFAHADPSFVTAVLTKLRFEVFQPGDLVVREGSVGRKMYFIQHGLLSVLARGARD 481

  Fly   641 AILGKGDLVGSDINVHLVATSNGQMTATTNSAGQDVVVRSSSDIKALTYCDLKCIHMGGLVEVLR 705
            ..|..|...|     .:...:.|:.||:               ::|.|||.|..:.:.....||.
  Rat   482 TRLTDGSYFG-----EICLLTRGRRTAS---------------VRADTYCRLYSLSVDHFNAVLE 526

  Fly   706 LYPEYQQQFANDIQHDLTCNLREGYENQDSDIGPSFPLPSISEDDENREEAEEGGKGEKE----- 765
            .:|..::.|.......|.   |.|.:|.......|.|.|..|          .||..|:.     
  Rat   527 EFPMMRRAFETVAMDRLR---RIGKKNSILQRKRSEPSPGSS----------SGGVMEQHLVQHD 578

  Fly   766 -------NGGGPPSGASPLHNISNSP------LHATRSPLLGMGSPRNQRL---HQRGRSLITLR 814
                   .|..|.:||    .:|..|      :||   ||.......|..:   ||||    .|.
  Rat   579 RDMARGIRGLAPGTGA----RLSGKPVLWEPLVHA---PLQAAAVTSNVAIALTHQRG----PLP 632

  Fly   815 ETNKRHRTLNAACSLDRGSFEEPEPLEEEQS----SGGKRPSLERLDS-QVSTLHQDVAQLSAEV 874
            .:.....|| .|.|..|.:.....||...::    :.|...|..||.: ...|||   |.||...
  Rat   633 LSPDSPATL-LARSARRSAGSPASPLVPVRAGPLLARGPWASTSRLPAPPARTLH---ASLSRTG 693

  Fly   875 RNAISALQEMTFTSNAMTSHSSLKFPPARSIPNISGVAGTRSGVAVEHGLMGGVLAAAELAAMQR 939
            |:.:|.|.                 ||       .|..|.|.|.      .|..|:|::.:..||
  Rat   694 RSQVSLLG-----------------PP-------PGGGGRRLGP------RGRPLSASQPSLPQR 728

  Fly   940 SS--SHPPEVWGRDVQLPTSNTASSKAPSPVEPKKTMTSRSS 979
            ::  ..|........:||.|... :|.|..|:|     ||||
  Rat   729 ATGDGSPRRKGSGSERLPPSGLL-AKPPGTVQP-----SRSS 764

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ElkNP_477009.1 PAS 36..132 CDD:238075
PAS_3 41..129 CDD:285623
Ion_trans 285..516 CDD:278921 63/265 (24%)
Ion_trans_2 <455..510 CDD:285168 15/54 (28%)
Crp 583..>650 CDD:223736 11/66 (17%)
CAP_ED 586..715 CDD:237999 22/128 (17%)
Hcn3NP_446137.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..47 14/52 (27%)
Involved in subunit assembly. /evidence=ECO:0000250 45..90 10/47 (21%)
Ion_trans_N 48..90 CDD:285597 10/44 (23%)
Ion_trans 110..357 CDD:278921 63/265 (24%)
Interaction with KCTD3. /evidence=ECO:0000250|UniProtKB:O88705 353..780 113/506 (22%)
Crp 421..>557 CDD:223736 28/158 (18%)
CAP_ED 427..535 CDD:237999 22/127 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 549..569 6/29 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 687..780 29/114 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166338706
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0498
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.740

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