DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Elk and cngb3

DIOPT Version :9

Sequence 1:NP_477009.1 Gene:Elk / 37047 FlyBaseID:FBgn0011589 Length:1284 Species:Drosophila melanogaster
Sequence 2:XP_017950391.2 Gene:cngb3 / 100497119 XenbaseID:XB-GENE-6035542 Length:784 Species:Xenopus tropicalis


Alignment Length:598 Identity:131/598 - (21%)
Similarity:247/598 - (41%) Gaps:104/598 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   247 EYKTQSIKKS--RLILPHYGVFKGIWDWVILVATFYVAL-------MVPYNAAFAKADRQT---- 298
            ::|..::|||  :..||  .......|...|:..|:||:       ::|....|..   ||    
 Frog   183 KFKRPTLKKSLQKFKLP--SSIDAYTDHSYLLWLFFVAVSFNWNCWLIPMRCVFPV---QTPNNI 242

  Fly   299 ---KVSDVIVEALFIVDI-LLNFRTTFVSRKGEVVSNSKQIAINYLRGW----FALDLLAALPFD 355
               .:||.|.:||:::|| :...|..|| :.|::::..||...||   |    |.||:.:.:|||
 Frog   243 LYWMISDYICDALYLIDIFIFQPRLQFV-KGGDIITERKQTKANY---WESTKFRLDVASVIPFD 303

  Fly   356 HLYASDLYDGEDSHIHLVKLTRLL----RLARLLQK--IDRYSQHTAMILTLLMFSFTLAAHWLA 414
            .||....:........|:|.|...    ||..:::|  |.|..:.|..:|.:|        |..|
 Frog   304 LLYMVFGFQPVFRANRLLKYTSFFEFNDRLEAVMEKAYIYRVIRTTGYLLFIL--------HINA 360

  Fly   415 CIWYVIAVKEYEWFPESNIGWLQLLAERKNASVAILTTAETYSTALYFTFTSLTSVGFGNVSANT 479
            ||:|  ....||....:.  |:.   :.|         ...|....||...:|.::| |.....|
 Frog   361 CIYY--WASSYEGIASTK--WVY---DGK---------GNMYLRCYYFAVRTLITIG-GLAEPQT 408

  Fly   480 TAEKVFTIIMMLIGALMHAVVFGNVTAIIQRMYSRRSLYESKWRDLKDFVALHNMPKELKQRIED 544
            ..|.||.::....|..:.:.:.|.:..:|....:.:|.|.:.......:::.:.:||.::.|:..
 Frog   409 VFEIVFQLLNYFTGVFVFSSLIGQMRDVIGAATAGQSYYRASVDKTVSYMSSNKIPKVVQNRVRT 473

  Fly   545 YFQTSWSLSHGIDIYETLREFPEELRGDVSMHLHREIL-QLPIFEAASQGCLKLLSLHIKTNFCA 608
            :::.:|.....:|..|.|.|.|.:::..:::.::..|: ::.:|:......::.|.|.:|:....
 Frog   474 WYEYTWDSQGMLDESELLEEMPTKMQLAIAIDVNFAIVDRVDLFKGCDSQMIQDLLLRLKSIVYL 538

  Fly   609 PGEYLIHKGDALNYIYYLCNGSMEVI--KDDMVVAILGKGDLVGSDINVHLVATSNGQMTATTNS 671
            ||:::..||:....:|.:..|:::|:  .|:..|.:..|...|..:|:: |.|....:.||...:
 Frog   539 PGDFVCKKGEIGREMYIIKQGAVQVLGGPDNQKVLVTLKAGAVFGEISL-LSAGGGNRRTANVVA 602

  Fly   672 AG------------QDVVVRSSSDIKALTYCDLKCIH--------------MGGLV----EVLRL 706
            .|            .:::|......|.||....|.:.              .|.|:    |..||
 Frog   603 YGFANLFILDKKSLNEILVHYPDSKKLLTKKAKKLLKEKGKPAGPAVVNKGFGHLIPPKPETPRL 667

  Fly   707 YPEYQQQFANDIQHDLTCNLREGYENQD------SDIGPSFPLPSISEDDENREEAE--EGGKGE 763
            :.......:......|...|::...|::      ||:..|...|:..::..|.::|:  |..| |
 Frog   668 FKALMSATSGRTGLSLLTRLKQATSNENKEVNKTSDMAKSTDDPAKQKEKSNVQDAKLTEESK-E 731

  Fly   764 KENGGGPPSGASP 776
            :..|.....||:|
 Frog   732 QPAGARATPGAAP 744

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ElkNP_477009.1 PAS 36..132 CDD:238075
PAS_3 41..129 CDD:285623
Ion_trans 285..516 CDD:278921 61/248 (25%)
Ion_trans_2 <455..510 CDD:285168 13/54 (24%)
Crp 583..>650 CDD:223736 14/68 (21%)
CAP_ED 586..715 CDD:237999 31/160 (19%)
cngb3XP_017950391.2 PLN03192 207..>589 CDD:215625 94/414 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.