DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Elk and cnga1

DIOPT Version :9

Sequence 1:NP_477009.1 Gene:Elk / 37047 FlyBaseID:FBgn0011589 Length:1284 Species:Drosophila melanogaster
Sequence 2:XP_017950934.1 Gene:cnga1 / 100491997 XenbaseID:XB-GENE-950954 Length:708 Species:Xenopus tropicalis


Alignment Length:789 Identity:170/789 - (21%)
Similarity:310/789 - (39%) Gaps:185/789 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   136 KMLEMNVNEECDS-----------------VFALTAALLGARFRAGSNAGMLGLGGLPGLGGPAA 183
            :.|..|.|:.|.|                 |.|:||.|...:..:|:||                
 Frog    35 RFLSKNNNKPCSSQSMESPKCYSIYSSKNRVHAVTATLHRDQQLSGANA---------------- 83

  Fly   184 SDGDTEAGEGNNLDVPAGCNMGRRRSRAVLYQLSGHYKPEK----------GGVKTKLKLGNNFM 238
               |......||.:     ...:::.:......|.|.|.:|          .|.|.|.|  :|..
 Frog    84 ---DYNTNNSNNKE-----EEEKKKKKKEKKGKSDHKKEKKKDKEKKKDKEKGEKEKNK--DNAK 138

  Fly   239 HSTEAPFPEYKTQ-----------SIKKSRLIL--PHYGVFKGIWDWVILVATFYVALMVPYNAA 290
            ...|....:.|.:           .|||..:.:  |...::.. |.:.|.:...|...|:...|.
 Frog   139 EEKEKEKEKGKAEKEKEKEKEKEKEIKKKDIFVIDPSGNLYYN-WLFCITMPVMYNWTMIIARAC 202

  Fly   291 FAKADRQTK----VSDVIVEALFIVDILLNFRTTFVSRKGEVVSNSKQIAINY-LRGWFALDLLA 350
            |.:..:...    ..|.:.:|::|.|:.:..||.:: .:|.:|.:..::...| :...|.||:|:
 Frog   203 FDELQQDYLELWFFLDYMSDAIYIADMFVRTRTGYL-EQGLLVRDEVKLRDKYKMTMQFKLDVLS 266

  Fly   351 ALPFDHLYASDLYDGEDSHIHLVKLTRLLRLARLLQKIDRYSQHT-----AMILTLLMFSFTLAA 410
            .:|.|.||.....:..:     ::|.:|||:||:.:...|....|     ..|..|:|: ..:..
 Frog   267 IIPTDILYLQFGLNYPE-----LRLNKLLRVARMFEFFQRTETRTNYPNIFRISNLIMY-IVIII 325

  Fly   411 HWLACIWY----VIAVKEYEW-FPESNIGWLQLLAERKNASVAILTTAETYSTALYFTFTSLTSV 470
            ||.||::|    .|...|..| :|.::......||.:             |..:||::..:||::
 Frog   326 HWNACVYYSISKAIGFGEDTWVYPNTSHPEYGRLARK-------------YVYSLYWSTLTLTTI 377

  Fly   471 GFGNVSANT-----TAEKVFTIIMMLIGALMHAVVFGNVTAIIQRMYSRRSLYESKWRDLKDFVA 530
            |      .|     .:|..|.:...|:|.|:.|.:.|||.::|..|.:.|:.::.:...:|.::.
 Frog   378 G------ETPPPVQDSEFWFVVADFLVGVLIFATIVGNVGSMISNMNAARAEFQGRIDAIKQYMH 436

  Fly   531 LHNMPKELKQRIEDYFQTSWSLSHGIDIYETLREFPEELRGDVSMHLHREIL-QLPIFEAASQGC 594
            ...:.|:|::|:..:|...|:....:|..|.|:..|::||.::::::|.:.| ::.||.....|.
 Frog   437 FRKVSKDLEKRVIKWFDYLWTNKKAVDEREVLKYLPDKLRAEIAINVHLDTLKKVRIFADCEAGL 501

  Fly   595 LKLLSLHIKTNFCAPGEYLIHKGDALNYIYYLCNGSMEVIKDDMVV--AILGKGDLVGSDINVHL 657
            |..|.|.::....:||:|:..|||....:|.:..|.:.|:.||.:.  .:|..|...| :|::  
 Frog   502 LIELVLKLQPQVYSPGDYICRKGDIGREMYIIKEGKLAVVADDGITQFVVLSDGSYFG-EISI-- 563

  Fly   658 VATSNGQMTATTNSAGQDVVVRSSSDIKALTYCDLKCIHMGGLVEVLRLYPEYQQQFANDIQHDL 722
                       .|..|.....|.:::||::.|.||.|:....|:|.|..||:.:.......:..|
 Frog   564 -----------LNIKGSKAGNRRTANIKSIGYSDLFCLSKDDLMEALTEYPDAKAMLEEKGRQIL 617

  Fly   723 TCNLREGYENQDSDIGPSFPLPSISEDDENREEAEEGGKGEKENGGGPPSGASPLHNISNSPLHA 787
               :::|.  .|.||..|      ..|.::.||.....:|..||                  |..
 Frog   618 ---MKDGL--LDLDIANS------GADPKDIEEKVIQMEGLVEN------------------LQT 653

  Fly   788 TRSPLLGMGSPRNQRLHQRGRSLITLRETNKRHRTLNAACSLDRGSFEEPEPLE-------EEQS 845
            ..:.||.......|:|.||                   ...:::....|.|.:|       ::::
 Frog   654 KFARLLAEYDSAQQKLKQR-------------------VTKIEKIIKPETEAVEMLVMEETKDEA 699

  Fly   846 SGGKRPSLE 854
            :|...||.|
 Frog   700 AGAPPPSQE 708

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ElkNP_477009.1 PAS 36..132 CDD:238075
PAS_3 41..129 CDD:285623
Ion_trans 285..516 CDD:278921 59/250 (24%)
Ion_trans_2 <455..510 CDD:285168 17/59 (29%)
Crp 583..>650 CDD:223736 19/68 (28%)
CAP_ED 586..715 CDD:237999 35/130 (27%)
cnga1XP_017950934.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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