DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mapmodulin and cfap410

DIOPT Version :10

Sequence 1:NP_001097361.1 Gene:Mapmodulin / 37043 FlyBaseID:FBgn0034282 Length:363 Species:Drosophila melanogaster
Sequence 2:XP_017952557.1 Gene:cfap410 / 394810 XenbaseID:XB-GENE-970167 Length:256 Species:Xenopus tropicalis


Alignment Length:182 Identity:52/182 - (28%)
Similarity:82/182 - (45%) Gaps:13/182 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 LESLSLINV---GLTTLKGFPKLPNLKKLELSDNRISSGLNYLTTSPKLQYLNLSGNKIKDLETL 101
            ||::..:|.   .||.:....:|||::.:.||.|.||: |..:.....|..|.|..|.|..|..|
 Frog    17 LENVRKLNCWGSRLTDISVCHELPNIEVMTLSVNNIST-LEPIRYCHNLAELYLRKNNISSLNEL 80

  Fly   102 KPLEEFKNLVVLDLFNNDATQVD--NYREKIFKMLPSLNFLDGFDCNDEEVQSDGDDDDEVNG-- 162
            ..|:|...|.:|.|..|.....|  .||..:.:.||:|..||.....:||:.....|.:|:.|  
 Frog    81 YYLKELPRLKILWLSENPCCGADPQKYRMTVLRNLPNLQKLDNQVVTEEELTQALTDGEELTGPQ 145

  Fly   163 ---NDSDEVGDKCNAFCLNGLEIDLDELEAF--EKRVKAKKSLQDKPPPQSE 209
               ::||...|:.:.....|.....::|..|  |:..|.::.|..||.|:.:
 Frog   146 TKISNSDNSHDETSIDRNYGTRESENDLLNFSMEETNKIREQLGMKPLPRDK 197

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MapmodulinNP_001097361.1 PPP1R42 15..142 CDD:455733 34/106 (32%)
leucine-rich repeat 17..39 CDD:275380
leucine-rich repeat 40..61 CDD:275380 6/23 (26%)
leucine-rich repeat 62..84 CDD:275380 6/21 (29%)
leucine-rich repeat 85..109 CDD:275380 9/23 (39%)
leucine-rich repeat 110..136 CDD:275380 8/27 (30%)
cfap410XP_017952557.1 LRR <15..>122 CDD:443914 33/105 (31%)
leucine-rich repeat 20..39 CDD:275378 3/18 (17%)
leucine-rich repeat 42..63 CDD:275382 6/21 (29%)
leucine-rich repeat 64..87 CDD:275382 9/22 (41%)
leucine-rich repeat 89..117 CDD:275382 8/27 (30%)
HIND 177..194 CDD:466011 5/16 (31%)
Blue background indicates that the domain is not in the aligned region.

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