DRSC/TRiP Functional Genomics Resources

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Protein Alignment grh and grhl3

DIOPT Version :9

Sequence 1:NP_476845.2 Gene:grh / 37038 FlyBaseID:FBgn0259211 Length:1333 Species:Drosophila melanogaster
Sequence 2:XP_021323102.1 Gene:grhl3 / 794613 ZFINID:ZDB-GENE-030131-9854 Length:590 Species:Danio rerio


Alignment Length:554 Identity:178/554 - (32%)
Similarity:265/554 - (47%) Gaps:100/554 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   801 PSPDSGIGTDAITPRD---QTNIQQSFDYTELCQPG--------TLIDANGSIPVSVNSIQQRTA 854
            ||..|   ||:.|..:   |.|:...|| :.|.||.        |.::|                
Zfish   113 PSKPS---TDSYTTDNYDKQVNLNNIFD-SLLPQPSQKSWQSDQTFLEA---------------- 157

  Fly   855 VHGSQNSPTTSLVDTSTNGSTRSRPWHDFGRQND---ADKIQIPKIFTNVGFRYHLESPISSSQR 916
                  :|...:.....||         ||.|..   :|....|..:.| .|::.|.:|.:|..:
Zfish   158 ------TPEVRIYHIGHNG---------FGGQTSPVYSDSYSSPGRYRN-DFQFLLGAPQASQHK 206

  Fly   917 REDDRITYINKGQFYGITLEYVHDAEKPIKNTTVKSVIMLMFREEKSPEDEIKAWQFWHSRQHSV 981
            ..:..:.|:||||||.|||:.| |:...:..:.||:|||.:|..:||||.::|.|..||:||.:|
Zfish   207 TTEIPMVYLNKGQFYPITLQGV-DSTAGVPCSKVKTVIMAVFENDKSPEMQLKYWNHWHARQPTV 270

  Fly   982 KQRILD-ADTKNSVGLVGCIEEVSHNAIAVYWNPLESSAKINIAVQCLSTDFSSQKGVKGLPLHV 1045
            |||::| ||.|.....|..:|||:.||::..||..| .||::|.:..||||||||||||||||::
Zfish   271 KQRVIDIADYKEVFSGVSNVEEVAFNALSFIWNTNE-EAKVHIGINSLSTDFSSQKGVKGLPLNL 334

  Fly  1046 QIDTFE-DPRDTAVFHRGYCQIKVFCDKGAERKTRDEERRAAKRKMTATGRKKLDELYHPVT--- 1106
            ||||:: ...:..:.||..||:|:|||||||||.|||||:.:||:...|.....:.....:.   
Zfish   335 QIDTYDFSSGNNRLIHRAVCQVKIFCDKGAERKMRDEERKRSKRRTKNTADSSNNNCKQALVSSS 399

  Fly  1107 ---DRSEFYGMQDFAKPPVLFSPAEDMEKVGQLGIGAATGMTFNPLSNGNSNSNSHSSLQSF--Y 1166
               |.:.|..:.|....||||.|......:.:.|:       ..|:|...|:   .|||:.:  .
Zfish   400 VGKDSTYFKTLDDHVTQPVLFIPEMHFSTMQRCGL-------VPPVSLEESD---RSSLKRYADA 454

  Fly  1167 GHETDSPDLKGASPFLLHGQKVATPTLKFHNHFPPDMQTDKKDHILDQNMLTSTPLTDFGPPMKR 1231
            ..::.||..|........|:...:..::....|.|            .::|.   :..|.|    
Zfish   455 NEQSSSPPCKQPRRDEQRGRGEVSNQIRDAGIFQP------------HSVLI---VNSFFP---- 500

  Fly  1232 GRMTPPTSERVMLYVRQENEEVYTPLHVVPPTTIGLLNAIENKYKISTTSINNIYRTNKKGITAK 1296
                     .|:||||:|:|||:..|.:..|...||..||..||.:...:|..|::..|:||...
Zfish   501 ---------AVLLYVRRESEEVFDALMLNTPNLKGLKEAISEKYGMQEDTIGKIFKKCKRGIFVN 556

  Fly  1297 IDDDMISFYCNEDIFLLEVQQIEDDLYDVTLTEL 1330
            :||::|..|.|...||:|:.::..:.|.|||.||
Zfish   557 MDDNIIEHYSNHSAFLIEISEVIVNHYQVTLMEL 590

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
grhNP_476845.2 CP2 903..1089 CDD:282385 92/187 (49%)
grhl3XP_021323102.1 CP2 172..381 CDD:309593 98/211 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 199 1.000 Domainoid score I3008
eggNOG 1 0.900 - - E1_KOG4091
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001445
OrthoInspector 1 1.000 - - otm24628
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11037
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X907
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
87.910

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