DRSC/TRiP Functional Genomics Resources

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Protein Alignment grh and grhl2a

DIOPT Version :9

Sequence 1:NP_476845.2 Gene:grh / 37038 FlyBaseID:FBgn0259211 Length:1333 Species:Drosophila melanogaster
Sequence 2:NP_001313462.1 Gene:grhl2a / 555744 ZFINID:ZDB-GENE-050913-123 Length:593 Species:Danio rerio


Alignment Length:701 Identity:207/701 - (29%)
Similarity:310/701 - (44%) Gaps:174/701 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   676 STTTFIAEPSYYREYFAPDGQGGYVPASTR---SLYGDVDVSVSQPGGVVTYEGRFAGSVPPPAT 737
            |...|.:|...::.|..     ..:.|:|:   |:.||.| ||:..|.:..|.     .||    
Zfish    21 SRRAFTSEDEAWKSYLE-----NPLTAATKAMMSINGDED-SVAALGILYDYY-----KVP---- 70

  Fly   738 TTVLTSVHHHQQQQQQQQQHQQQQQQQQHHQQQQHHSQDGKSNGGATPLYAKAITAAGLTVDLPS 802
                                 ::::....|:..:.|.:...|..|......:......|.|:|  
Zfish    71 ---------------------KEKRLLPVHKLPEDHEKSRISQDGVESAENRIHVLKSLPVNL-- 112

  Fly   803 PDSGIGTDAITPRDQTNIQQSFDYTELCQPGTLIDANGSIPV--------SVNSIQQRTAVHGSQ 859
                    ::.| |..|.|..|        ||:...:|.:..        |.:|..|:...|.:.
Zfish   113 --------SLNP-DSENKQDLF--------GTVPAEDGVVATVKPEVYAQSFSSHHQQLHYHRTP 160

  Fly   860 NSPTTSLVDTSTNGSTR-------SRPWHDF--GRQNDADKIQIP-----KIFTN--VG---FRY 905
            ..|  .|.|:.:....|       |.|...|  ....|..:.::|     :.||:  .|   |:|
Zfish   161 YHP--HLQDSVSVSHDRYMKDDQCSTPDSTFEDSYPEDPMRYRVPTTPAAEDFTHEQAGLNMFQY 223

  Fly   906 HLESPISSSQRREDDRITYINKGQFYGITLEYVHDAEKPIKN--TTVKSVIMLMFREEKSPEDEI 968
            ::|:..|..::..|..:.|:||||||||||... .|.|.:::  :.|::|:|::|.:||..::::
Zfish   224 NIEASRSVREKAADGPMVYLNKGQFYGITLSET-GANKGLRHPISKVRTVVMVVFGQEKCRDEQL 287

  Fly   969 KAWQFWHSRQHSVKQRILD-ADTKNSVGLVGCIEEVSHNAIAVYWNPLESSAKINIAVQCLSTDF 1032
            |.|.:||:|||:.|||:|| ||.|.|...:|.|||:::||::..|: :...||:.|.|.||||||
Zfish   288 KHWNYWHTRQHTAKQRVLDIADYKESFNTIGNIEEIAYNAVSFTWD-VNEEAKVFITVNCLSTDF 351

  Fly  1033 SSQKGVKGLPLHVQIDTFE-DPRDTAVFHRGYCQIKVFCDKGAERKTRDEERRAAKRKM---TAT 1093
            |||||||||||.:||||:. :.|.....||.|.|||||||||||||.||||::..::|:   |..
Zfish   352 SSQKGVKGLPLMIQIDTYSYNNRSNRPIHRAYAQIKVFCDKGAERKIRDEEKKQLRKKVKGQTVG 416

  Fly  1094 G------RKKLDELYHPVTDRSEFYGMQDFAKPPVLFSP---AEDMEKVGQLGIGAATGMTFNPL 1149
            |      |..|..|.....|.:.|..|.|....||||.|   ..::::.||              
Zfish   417 GHGQDGKRGNLASLPPKRPDITLFKAMTDLESQPVLFIPDVHLNNLQRAGQ-------------- 467

  Fly  1150 SNGNSNSNSHSSLQSFYGHETDSPDLKGASPFLLHGQKVATPTLKFHNHFPPDMQTDKKDHILDQ 1214
                        :.||...|.::..:....||                      .|.:.|     
Zfish   468 ------------VFSFGVEEMENDGVAVKRPF----------------------GTSEAD----- 493

  Fly  1215 NMLTSTPLTDFGPPMKRGRMTPPTSERVMLYVRQENEEVYTPLHVVPPTTIGLLNAIENKYKIST 1279
                       .||.|..|    ...:|:||||:|.:||:..|.:..||...||.||..||.:..
Zfish   494 -----------SPPTKYSR----EERKVLLYVRREADEVFDALMLRSPTLKSLLEAISGKYSVPV 543

  Fly  1280 TSINNIYRTNKKGITAKIDDDMISFYCNEDIFLLEVQQIEDDLYDVTLTEL 1330
            ..:..||:.:||||...:||::|..|||||.|:|.:.. ..|.:.|||||:
Zfish   544 EKMTKIYKKSKKGILVNMDDNIIEHYCNEDTFILAIDN-HADCFRVTLTEI 593

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
grhNP_476845.2 CP2 903..1089 CDD:282385 93/189 (49%)
grhl2aNP_001313462.1 CP2 201..411 CDD:282385 98/211 (46%)
MIEAP 441..>515 CDD:292645 26/141 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 199 1.000 Domainoid score I3008
eggNOG 1 0.900 - - E1_KOG4091
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001445
OrthoInspector 1 1.000 - - otm24628
orthoMCL 1 0.900 - - OOG6_104596
Panther 1 1.100 - - O PTHR11037
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X907
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
109.810

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