DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment grh and grhl2

DIOPT Version :10

Sequence 1:NP_476845.2 Gene:grh / 37038 FlyBaseID:FBgn0259211 Length:1333 Species:Drosophila melanogaster
Sequence 2:NP_001011338.1 Gene:grhl2 / 496802 XenbaseID:XB-GENE-485995 Length:619 Species:Xenopus tropicalis


Alignment Length:552 Identity:192/552 - (34%)
Similarity:279/552 - (50%) Gaps:115/552 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   814 PRDQTNIQQSFDYTEL-CQPGTLIDANGSIPVSVNSIQQRTAVHGSQNSPTTSLVD--TSTNGST 875
            |.....:.::.::|.: ..|.....::|..|..|...|....|| |..:.:..|.|  .||..||
 Frog   148 PASAVTVVKAEEFTPVFMAPSVPYRSDGEEPRGVIFEQTHFGVH-SITTHSDYLKDDQRSTPDST 211

  Fly   876 RSRPWHDFGRQNDADKIQIPKIFT---------NVGFRYHLESPISSSQRREDDRITYINKGQFY 931
            .:..:     :...:|.:.|.:.|         :..|:|.||:..|..|::.:..:||:||||||
 Frog   212 YNESF-----KETTEKYRTPSVGTEEFLYEQTASSTFQYTLEATKSLRQKQGEGPMTYLNKGQFY 271

  Fly   932 GITLEYVHDAEKPIKN--TTVKSVIMLMFREEKSPEDEIKAWQFWHSRQHSVKQRILD-ADTKNS 993
            .|||... .|.|..::  :.|:||||::|.|:|:.::::|.|::||||||:.|||:|| ||.|.|
 Frog   272 AITLSET-GANKCFRHPISKVRSVIMVVFSEDKNRDEQLKYWKYWHSRQHTAKQRVLDIADYKES 335

  Fly   994 VGLVGCIEEVSHNAIAVYWNPLESSAKINIAVQCLSTDFSSQKGVKGLPLHVQIDTFE-DPRDTA 1057
            ...:|.|||:::||::..|: :...|||.|.|.|||||||||||||||||.:||||:. :.|...
 Frog   336 FNTIGNIEEIAYNAVSFTWD-VNEEAKIFITVNCLSTDFSSQKGVKGLPLMIQIDTYSYNNRSNK 399

  Fly  1058 VFHRGYCQIKVFCDKGAERKTRDEERR---------AAKRKMTATGRKKLDELYHPVTDRSE--- 1110
            ..||.|||||||||||||||.|||||:         ||:.:...:...||..:  |:..:|:   
 Frog   400 PIHRAYCQIKVFCDKGAERKIRDEERKQNRKKGKSQAAQAQCNNSADGKLSAV--PLQKKSDITF 462

  Fly  1111 FYGMQDFAKPPVLFSP---AEDMEKVGQLGIGAATGMTFNPLSNGNSNSNSHSSLQSFYGHETDS 1172
            |..|.|....||||.|   ..::::.||:                            ||  .||.
 Frog   463 FKTMTDLDVQPVLFIPDVHFGNLQRTGQV----------------------------FY--NTDD 497

  Fly  1173 PDLKGASPFLLHGQKVATPTLKFHNHFPPDMQTDKKDHILDQNMLTSTPLTDFGPP----MKRGR 1233
             |::|.                                :|.:.:|.... .|:|||    ||.| 
 Frog   498 -DIEGG--------------------------------VLVKRLLRPVD-EDYGPPAPKQMKEG- 527

  Fly  1234 MTPPTSERVMLYVRQENEEVYTPLHVVPPTTIGLLNAIENKYKISTTSINNIYRTNKKGITAKID 1298
                 |.:|:||||:|.:||:..|.:..||..|||.||..||.|....|..||:.:||||...:|
 Frog   528 -----SRKVLLYVRKETDEVFDALMLKYPTVKGLLEAISEKYGIPVEKIVKIYKKSKKGILVNMD 587

  Fly  1299 DDMISFYCNEDIFLLEVQQIEDDLYDVTLTEL 1330
            |::|..|.|||.|:|.|:.:.:..|.:||||:
 Frog   588 DNIIEHYSNEDTFILNVESLAEQGYKITLTEI 619

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
grhNP_476845.2 CP2 903..1089 CDD:461338 102/198 (52%)
grhl2NP_001011338.1 Transcription activation. /evidence=ECO:0000250|UniProtKB:Q8K5C0 1..90
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 86..108
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 125..147
CP2 224..433 CDD:461338 102/210 (49%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 423..444 5/20 (25%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.