DRSC/TRiP Functional Genomics Resources

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Protein Alignment grh and grhl1

DIOPT Version :9

Sequence 1:NP_476845.2 Gene:grh / 37038 FlyBaseID:FBgn0259211 Length:1333 Species:Drosophila melanogaster
Sequence 2:XP_001923763.1 Gene:grhl1 / 324942 ZFINID:ZDB-GENE-030131-3665 Length:613 Species:Danio rerio


Alignment Length:602 Identity:201/602 - (33%)
Similarity:286/602 - (47%) Gaps:152/602 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   807 IGTDA-------ITPRDQTNIQQSFDYTELCQ--------PGT--LIDANG-----------SI- 842
            :|:|.       :||..:|::|...:..::.:        ||.  :.|..|           || 
Zfish    85 LGSDVDPNKRNMLTPLQETSMQLGDNRIQVLKGVPLNIVLPGNQHVQDKRGLFPSPDTTVTVSIA 149

  Fly   843 PVSVNSIQQRTAVHG---SQNSPTTSLVDTSTNGSTRSRPWHDFG-----RQNDADKIQIPKIFT 899
            ||:.||::.....||   :..:|..:..|:.|....|..|.:.|.     |..|:...:.|.:|:
Zfish   150 PVASNSVKTEGPSHGFSVTVPNPHCAEPDSHTVVFDRQLPHNQFSPNTQPRTPDSTFPENPDVFS 214

  Fly   900 NVG------------------------FRYHLESPISSSQRREDDRITYINKGQFYGITLEYVHD 940
            ..|                        |.|.||:..|..|:..|..:||:||||||.|||....:
Zfish   215 FPGDLQLRMGPITQDDYGTFDTVSGNNFEYILEASKSLRQKSGDGTMTYLNKGQFYPITLRETDN 279

  Fly   941 A---EKPIKNTTVKSVIMLMFREEKSPEDEIKAWQFWHSRQHSVKQRILD-ADTKNSVGLVGCIE 1001
            .   :.||  ..|:||:|::|.||||.:|::|.|::||||||:.|||.:| ||.|.|...:..||
Zfish   280 GKLLQGPI--CKVRSVVMVVFGEEKSRDDQLKHWKYWHSRQHTAKQRCIDIADYKESFNTISNIE 342

  Fly  1002 EVSHNAIAVYWNPLESSAKINIAVQCLSTDFSSQKGVKGLPLHVQIDTFE-DPRDTAVFHRGYCQ 1065
            |:|:|||:..|: :...|||.|:|.|||||||||||||||||::||||:. :.|.....||.|||
Zfish   343 EISYNAISFTWD-ISEEAKIFISVNCLSTDFSSQKGVKGLPLNIQIDTYSYNNRSNKPIHRAYCQ 406

  Fly  1066 IKVFCDKGAERKTRDEERRAAKRK---------MTATGRKKLDELYHPVTDRSEFYGMQDFAKPP 1121
            ||||||||||||.|||||:.::||         :...|......|.|..||.:.|..:.||...|
Zfish   407 IKVFCDKGAERKIRDEERKQSRRKGKCPDVNPPLGNFGADVKVPLLHKRTDMTVFRTLTDFETQP 471

  Fly  1122 VLFSPAEDMEKVGQLGIGAATGMTFNPLSNGNSNSNSHSSLQSFYGHETDSPDLKGASPFLLHGQ 1186
            |||.|                              :.|.|  :|..|...:.|.:..|       
Zfish   472 VLFIP------------------------------DIHFS--TFQRHAFTAEDSEEGS------- 497

  Fly  1187 KVATPTLKFHNHFPPDMQTDKKDHILDQNMLTSTPLT--DFG-PPMKRGRMTPPTSERVMLYVRQ 1248
                                         .:...|.|  :|| ||.|..||..|  :||:||||:
Zfish   498 -----------------------------AMKRLPYTEEEFGSPPNKLARMDEP--KRVLLYVRR 531

  Fly  1249 ENEEVYTPLHVVPPTTIGLLNAIENKYKISTTSINNIYRTNKKGITAKIDDDMISFYCNEDIFLL 1313
            |.|||:..|.:..||..||:.||..||::|...|..:|:..||||...:||::|..|.|||.|.:
Zfish   532 ETEEVFDALMLKTPTLKGLVEAISEKYEVSLEKIGKVYKKCKKGILVNMDDNIIKHYSNEDTFQI 596

  Fly  1314 EVQQIEDDLYDVTLTEL 1330
            ::::: ..:..:||||:
Zfish   597 QMEEM-GGMIKLTLTEI 612

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
grhNP_476845.2 CP2 903..1089 CDD:282385 103/190 (54%)
grhl1XP_001923763.1 CP2 241..432 CDD:282385 105/193 (54%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 199 1.000 Domainoid score I3008
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001445
OrthoInspector 1 1.000 - - otm24628
orthoMCL 1 0.900 - - OOG6_104596
Panther 1 1.100 - - LDO PTHR11037
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3190
SonicParanoid 1 1.000 - - X907
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
98.940

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