DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment grh and Tfcp2

DIOPT Version :9

Sequence 1:NP_476845.2 Gene:grh / 37038 FlyBaseID:FBgn0259211 Length:1333 Species:Drosophila melanogaster
Sequence 2:XP_017172026.1 Gene:Tfcp2 / 21422 MGIID:98509 Length:566 Species:Mus musculus


Alignment Length:476 Identity:121/476 - (25%)
Similarity:199/476 - (41%) Gaps:109/476 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   903 FRYHLESPISSSQRREDDRITYINKGQFYGI-TLEYVHDAEKP-IKNTTVKSVIMLMFREEKSPE 965
            |:|.|.:..|.:.:..|:.:||:|:||.|.| .|:.....|.| :....|||:..::|.:.:...
Mouse    67 FQYVLCAATSPAVKLHDETLTYLNQGQSYEIRMLDNRKLGELPELNGKLVKSIFRVVFHDRRLQY 131

  Fly   966 DEIKAWQFWHSRQHSVKQRILDADTKNSVGLVG-CIEEVSHNAIAVYWNPLESSAKINIAVQCLS 1029
            .|.:..:.|  |.:....||||.|...|||::. .......|.:...|:|.:.:: :.|.|.|:|
Mouse   132 TEHQQLEGW--RWNRPGDRILDIDIPMSVGVIDPRANPTQLNTVEFLWDPSKRTS-VFIQVHCIS 193

  Fly  1030 TDFSSQK--GVKGLPLHVQIDTFEDPRD---TAVFHRGYCQIKVFCDKGAERKTRDEERRAAKRK 1089
            |:|:.:|  |.||:|..||||||::..:   |...|...||||||..|||:||.:.:..:..|| 
Mouse   194 TEFTMRKHGGEKGVPFRVQIDTFKENGNGEYTEHLHSASCQIKVFKPKGADRKQKIDREKMEKR- 257

  Fly  1090 MTATGRKKLDELYHP------VTDRSEFYGMQDFAKPPVLF---SPAEDMEKVGQLGIGAATGMT 1145
               |..:|  |.|.|      :|:.|.:        |.:.:   ||:....         ::..:
Mouse   258 ---TPHEK--EKYQPSYETTILTECSPW--------PEITYVNNSPSPGFN---------SSHSS 300

  Fly  1146 FNPLSNGNSNSNSHSSLQSFYGHETDSPD------LKGASP----FLLHGQKVATPTLKFHNHFP 1200
            |: |..||.:.|          |:.:.|.      |...:|    ..||..:.:|.|..|.|...
Mouse   301 FS-LGEGNGSPN----------HQPEPPPPVTDNLLPTTTPQEAQQWLHRNRFSTFTRLFTNFSG 354

  Fly  1201 PDMQTDKKDHILDQNMLTSTPLTDFGPP-------MKRGRMTPPTSERVMLYVRQENEE------ 1252
            .|:....:|.::.          ..||.       ..:|||..|   |:.:||.||:.:      
Mouse   355 ADLLKLTRDDVIQ----------ICGPADGIRLFNALKGRMVRP---RLTIYVCQESLQLREQQP 406

  Fly  1253 -------------------VYTPLHVVPPTTIGLLNAIENKYKISTTSINNIYRTNKKGITAKID 1298
                               ||..:::...|.:.|...|...:.||...|:.||:....||...|.
Mouse   407 QPQPQPQKQEDGDSNGTFFVYHAIYLEELTAVELTEKIAQLFSISPHQISQIYKQGPTGIHVVIS 471

  Fly  1299 DDMISFYCNEDIFLLEVQQIE 1319
            |:|:..:..|..|:|:..:.:
Mouse   472 DEMVQNFQEEACFILDTMEAQ 492

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
grhNP_476845.2 CP2 903..1089 CDD:282385 64/193 (33%)
Tfcp2XP_017172026.1 CP2 52..257 CDD:367976 63/192 (33%)
SAM_TFCP2 329..395 CDD:188988 17/78 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4091
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.