DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment grh and ubp1

DIOPT Version :9

Sequence 1:NP_476845.2 Gene:grh / 37038 FlyBaseID:FBgn0259211 Length:1333 Species:Drosophila melanogaster
Sequence 2:XP_005159783.1 Gene:ubp1 / 100136855 ZFINID:ZDB-GENE-060503-870 Length:544 Species:Danio rerio


Alignment Length:552 Identity:130/552 - (23%)
Similarity:217/552 - (39%) Gaps:140/552 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   881 HDF-------------GRQNDADKIQIPKIF-------------TNVGFRYHLESPISSSQRRED 919
            |||             |..:.:|.:.:| ||             .|..|:|.:.:..|.:.:..:
Zfish    18 HDFDASLSGIGQELGAGAYSMSDVLALP-IFKQEDVSVPVESDTKNPPFQYVMCAATSPAVKLHE 81

  Fly   920 DRITYINKGQFYGI-TLEYVHDAEKPIKNTTVKSVIMLMFREEK---SPEDEIKAWQFWHSRQHS 980
            :.:||:|:||.|.| .|:.....|.|..|..|||::.::|.:.:   ....:::.|: |    :.
Zfish    82 ETLTYLNQGQSYEIRMLDNRKKGEMPELNKIVKSIVRVVFHDRRLQYMEHQQLEGWK-W----NR 141

  Fly   981 VKQRILDADTKNSVGLVGCIEEVSH----NAIAVYWNPLESSAKINIAVQCLSTDFSSQK--GVK 1039
            ...|:||.|...|||:.   |..:|    ||....|: |...|.:.:.|.|:||:|:.:|  |.|
Zfish   142 PGDRLLDIDIPMSVGIT---EAQAHPSQLNAAEFLWD-LSKRASVFVQVHCISTEFTPRKHGGEK 202

  Fly  1040 GLPLHVQIDTFEDPRDTAV---FHRGYCQIKVFCDKGAERKTRDEERRAAKRKMTATGRKKLDEL 1101
            |:|..:|||||:.......   .|...||||||..|||:||.:.:..:..||    |.::|  |.
Zfish   203 GVPFRIQIDTFKQDESGEYIEHLHSASCQIKVFKPKGADRKQKTDREKMEKR----TPQEK--EK 261

  Fly  1102 YHPVTDRSEFYGMQDFAKPPVLFSPAE-DMEKVGQLGIGAATGMTF-----------------NP 1148
            |.|..|.:.   :.:....||:....| :::|..:..:.|..|.:.                 ||
Zfish   262 YQPSYDTTI---LSETRLEPVMEEVVELELKKSSKRTLPADCGDSIAKSKRGSCSPWPDNAYVNP 323

  Fly  1149 LSNG----NSNSNSHSSLQSFYGHETDSPDLKGASPFLLHGQKVATPTLKFHN------------ 1197
            ::..    .|.:|::||..:....|:.||:.:|....|...:.: :||....:            
Zfish   324 ITAATPTFTSTTNTYSSSSTVPDSESSSPNHQGDLGNLTVVESL-SPTASIQDTQKWLLKNRFNS 387

  Fly  1198 ------HFPPDMQTDKKDHILDQNMLTSTPLTDF-----GPPMKRGRMTPPTSERVMLYV----- 1246
                  ||...          |...||...|...     |..:.....:.....|:.|||     
Zfish   388 YSRVFAHFSGS----------DLLKLTREDLVQICGAADGIRLYNALKSRAVRPRLTLYVSLEAS 442

  Fly  1247 -----------RQENEE--------VYTPLHVVPPTTIGLLNAIENKYKISTTSINNIYRTNKKG 1292
                       |.:|.|        ||..|::...|...|...|.:...:..|.|:.:|:....|
Zfish   443 QSESPLLEKRGRSKNGEHSSPAAIPVYHALYLEEMTACELTRKISSVLALPLTHISQVYKQGPTG 507

  Fly  1293 ITAKIDDDMISFYCNEDIFLLEVQQIEDDLYD 1324
            |...:.|.|:..:.:|..|::.:  |:||..|
Zfish   508 IHILLSDQMVYNFLDESSFIISI--IQDDSND 537

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
grhNP_476845.2 CP2 903..1089 CDD:282385 62/198 (31%)
ubp1XP_005159783.1 CP2 51..254 CDD:282385 62/211 (29%)
SAM_superfamily 372..438 CDD:301707 10/75 (13%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4091
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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