DRSC/TRiP Functional Genomics Resources

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Protein Alignment grh and grhl2b

DIOPT Version :9

Sequence 1:NP_476845.2 Gene:grh / 37038 FlyBaseID:FBgn0259211 Length:1333 Species:Drosophila melanogaster
Sequence 2:XP_005159637.1 Gene:grhl2b / 100034503 ZFINID:ZDB-GENE-060503-719 Length:601 Species:Danio rerio


Alignment Length:696 Identity:218/696 - (31%)
Similarity:322/696 - (46%) Gaps:159/696 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   683 EPSYY--REYFAPD-GQGGY----VPASTR---SLYGDVDVSVSQPGGVVTY-----EGRF---- 728
            |||::  |.|.:.| ....|    :.|:|:   |:.||.| |.:..|.:..|     :.|.    
Zfish    17 EPSFHQRRPYTSEDEAWRSYLENPLTAATKAMMSINGDED-SAAALGLLYEYYKVPKDKRVPISK 80

  Fly   729 ---AGSVPPPATTTVLTS-------VHHHQQQQQQQQQHQQQQQQQQHHQQQQHHSQDGKSNGGA 783
               ....|...:|.|..|       |.:|.|..:....:.......|.::::|:....|:| |.|
Zfish    81 VVEMSDEPEKRSTPVGNSSQMEPETVDNHVQVLKSVPVNLSLNTDHQDNKREQYSVPAGES-GTA 144

  Fly   784 TPLYAKAITAAGLTVDLPSPDSGIGTDAITPRDQTNI----QQSFDYTELCQPGTLIDANGSIPV 844
            ..:.|:|.||..:|       || |.......:|..:    ..|||.:.:.......|.:.|.|.
Zfish   145 AVVKAEAHTAVFMT-------SG-GHYRTEGEEQMRVICEQTHSFDTSTINHSAYGKDDHRSSPE 201

  Fly   845 SVNSIQQRTAVHGSQNSPTTSLVDTSTNGSTRSRPWHDFGRQNDADKIQIPKIFTNVGFRYHLES 909
            |............|...|...:.|.|....|                           |:|.||:
Zfish   202 STYEDDSNEKYRSSSIGPDDFIFDQSHMLDT---------------------------FQYTLEA 239

  Fly   910 PISSSQRREDDRITYINKGQFYGITLEYVHDAEKPIKN--TTVKSVIMLMFREEKSPEDEIKAWQ 972
            ..|..|::.:..:||:||||||.|||... .|.|.:::  :.|:||:|::|.|:|:.::::|.|:
Zfish   240 SKSLRQKQGEGPMTYLNKGQFYAITLSET-SANKRLRHPISKVRSVVMVVFSEDKNRDEQLKYWK 303

  Fly   973 FWHSRQHSVKQRILD-ADTKNSVGLVGCIEEVSHNAIAVYWNPLESSAKINIAVQCLSTDFSSQK 1036
            :||||||:.|||:|| ||.|.|...:|.|||:::||::..|: |...|||.|.|.||||||||||
Zfish   304 YWHSRQHTAKQRVLDIADYKESFNTIGNIEEIAYNAVSFTWD-LNEEAKIFITVNCLSTDFSSQK 367

  Fly  1037 GVKGLPLHVQIDTFE-DPRDTAVFHRGYCQIKVFCDKGAERKTRDEERRAAKRKM--------TA 1092
            |||||||.:||||:. :.|.....||.|||||||||||||||.|||||:..::|.        |.
Zfish   368 GVKGLPLMIQIDTYSYNNRSNKPLHRAYCQIKVFCDKGAERKIRDEERKQNRKKTKGKDGGSGTV 432

  Fly  1093 TGRKKLDELYHPVTDRSEFYGMQDFAKPPVLFSP---AEDMEKVGQLGIGAATGMTFNPLSNGNS 1154
            |..||.|.        :.|..|.|....||||.|   ..::::.||:       ..||       
Zfish   433 TVPKKCDS--------TLFKTMTDLDAQPVLFIPDVHFGNLQRAGQV-------FAFN------- 475

  Fly  1155 NSNSHSSLQSFYGHETDSPDLKGASPFLLHGQKVATPTLKFHNHFPPDMQTDKKDHILDQNMLTS 1219
                           |:..:.:|:                                :|.:.|..|
Zfish   476 ---------------TEEIECEGS--------------------------------VLVKRMFRS 493

  Fly  1220 TPLTDFGPPMKRGRMTPPTSERVMLYVRQENEEVYTPLHVVPPTTIGLLNAIENKYKISTTSINN 1284
            :. .||.||..: ::...|.:||:||||:|::||:..|.:..||..||::||..||.:....:..
Zfish   494 SE-EDFCPPPHK-QLREDTQKRVLLYVRKESDEVFDALMLRSPTVRGLMDAISEKYGVPIDRMAK 556

  Fly  1285 IYRTNKKGITAKIDDDMISFYCNEDIFLLEVQQIEDDLYDVTLTEL 1330
            ||:.:||||...:||::|..|.|||.|:|.::... |.|.:||||:
Zfish   557 IYKKSKKGILVNMDDNIIEHYSNEDTFILNIESYA-DAYKITLTEI 601

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
grhNP_476845.2 CP2 903..1089 CDD:282385 100/189 (53%)
grhl2bXP_005159637.1 CP2 209..423 CDD:282385 106/242 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 199 1.000 Domainoid score I3008
eggNOG 1 0.900 - - E1_KOG4091
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001445
OrthoInspector 1 1.000 - - otm24628
orthoMCL 1 0.900 - - OOG6_104596
Panther 1 1.100 - - O PTHR11037
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X907
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
109.810

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