DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment grh and tfcp2

DIOPT Version :9

Sequence 1:NP_476845.2 Gene:grh / 37038 FlyBaseID:FBgn0259211 Length:1333 Species:Drosophila melanogaster
Sequence 2:XP_005162411.1 Gene:tfcp2 / 100001906 ZFINID:ZDB-GENE-030131-2523 Length:512 Species:Danio rerio


Alignment Length:502 Identity:126/502 - (25%)
Similarity:207/502 - (41%) Gaps:134/502 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   903 FRYHLESPISSSQRREDDRITYINKGQFYGI-TLEYVHDAEKP-IKNTTVKSVIMLMFREEKSPE 965
            |:|.|.:..|.:.:..|:.:||:|:||.|.| .|:.....|.| |....|||:|.::|.:.:...
Zfish    67 FQYVLCAATSPAVKLHDETLTYLNQGQSYEIRMLDNRKMGELPEINGKMVKSIIRVVFHDRRLQY 131

  Fly   966 DEIKAWQFWHSRQHSVKQRILDADTKNSVGLVG-CIEEVSHNAIAVYWNPLESSAKINIAVQCLS 1029
            .|.:..:.|  |.:....||||.|...|||:|. .......|.:...|:|.:.:: :.|.|.|:|
Zfish   132 TEHQQLEGW--RWNRPGDRILDLDIPMSVGVVDPRANPTQLNTVEFLWDPSKRTS-VFIQVHCIS 193

  Fly  1030 TDFSSQK--GVKGLPLHVQIDTFEDPRD---TAVFHRGYCQIKVFCDKGAERKTRDE----ERRA 1085
            |:|:.:|  |.||:|..:|||||::...   |...|...||||||..|||:||.:.:    |:||
Zfish   194 TEFTMRKHGGEKGVPFRIQIDTFKENEAGEYTEHLHSASCQIKVFKPKGADRKQKTDREKMEKRA 258

  Fly  1086 AKRKMTATGRKKLDELYHPVTDRSEFYGMQDFAKPPVL--FSPAEDMEKVGQLGIGAATGMTFNP 1148
            .:.|          |.|.|..:.:            :|  .||..:           ||.:..:|
Zfish   259 PQEK----------EKYQPSYETT------------ILTECSPWPE-----------ATYVNNSP 290

  Fly  1149 LSNGNSNSNSHSSLQSFYGHETDSPDLKGASPFLLHGQKVATPTLKFHNHFPPDMQTDKKDHILD 1213
            ....||..||....:. .|..:..|:     |.    .::|..:|..|        ..:::...:
Zfish   291 SPGFNSTHNSFPVTEG-NGSPSHQPE-----PV----AQLADVSLSCH--------LLRRESESN 337

  Fly  1214 QNML-TSTP------------------LTDF-----------------GPP-------MKRGRMT 1235
            ||:| |:||                  .|:|                 ||.       ..:||:.
Zfish   338 QNLLPTATPQEAQQWLHRNRFSPFCRLFTNFSGADLLKLTREDVIQICGPADGIRLFNALKGRVV 402

  Fly  1236 PPTSERVMLYVRQENEE-------------------VYTPLHVVPPTTIGLLNAIENKYKISTTS 1281
            .|   |:.:||.||:::                   ||..:::...|.:.|...:...:.||...
Zfish   403 RP---RLTIYVCQESQQAREQHQKHENGDGTNNTFFVYHAIYLEDLTAVELTEKLAQLFSISPRQ 464

  Fly  1282 INNIYRTNKKGITAKIDDDMISFYCNEDIFLLEVQQIE-DDLYDVTL 1327
            |:.|::....||...:.|:||..:.:|..|:|:..:.| :|.|.:.|
Zfish   465 ISQIFKQGPTGIHVLVSDEMIQNFQDEVCFVLDTMKAETNDGYHIIL 511

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
grhNP_476845.2 CP2 903..1089 CDD:282385 68/197 (35%)
tfcp2XP_005162411.1 CP2 57..257 CDD:282385 66/192 (34%)
SAM_TFCP2 345..411 CDD:188988 11/68 (16%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4091
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.