DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ubc10 and Ubc4

DIOPT Version :9

Sequence 1:NP_477414.1 Gene:Ubc10 / 37035 FlyBaseID:FBgn0026316 Length:154 Species:Drosophila melanogaster
Sequence 2:NP_001287013.1 Gene:Ubc4 / 39133 FlyBaseID:FBgn0015321 Length:199 Species:Drosophila melanogaster


Alignment Length:157 Identity:50/157 - (31%)
Similarity:79/157 - (50%) Gaps:19/157 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 APRRLRKELSDLQGN------ALKSFRDIKADDDNLLRWTGL----IVPDNPPYNKGAFRIEINF 57
            |..|:::|..::..:      ::|    |:..:|:   ||.|    ..|.:.||..|.|.:||..
  Fly     5 AVSRIKREFKEVMRSEEIVQCSIK----IELVNDS---WTELRGEIAGPPDTPYEGGKFVLEIKV 62

  Fly    58 PAEYPFKPPKINFKTRIYHPNIDE-KGQVCLPIISTENWKPATRTDQVVQALVDLINDPEPEHPL 121
            |..|||.|||:.|.|||:||||.. .|.:||.|:. :||..|.....|:.:|..|:...||:.|.
  Fly    63 PETYPFNPPKVRFITRIWHPNISSVTGAICLDILK-DNWAAAMTLRTVLLSLQALLAAAEPDDPQ 126

  Fly   122 RAELAEEFLKDRKKFVKNAEDYTKKHS 148
            .|.:|.:|......|:..|:.:|..::
  Fly   127 DAVVAYQFKDKYDLFLLTAKHWTNAYA 153

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ubc10NP_477414.1 UQ_con 6..144 CDD:395127 48/148 (32%)
Ubc4NP_001287013.1 COG5078 1..153 CDD:227410 50/155 (32%)
UQ_con 8..149 CDD:278603 48/148 (32%)
UBA_II_E2_UBCD4 163..198 CDD:270574
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24068
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.010

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