DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ubc10 and ubc-20

DIOPT Version :9

Sequence 1:NP_477414.1 Gene:Ubc10 / 37035 FlyBaseID:FBgn0026316 Length:154 Species:Drosophila melanogaster
Sequence 2:NP_497174.1 Gene:ubc-20 / 175185 WormBaseID:WBGene00006715 Length:199 Species:Caenorhabditis elegans


Alignment Length:148 Identity:46/148 - (31%)
Similarity:81/148 - (54%) Gaps:5/148 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 RLRKELSDLQGNALKSFRDIKAD--DDNLLRWTGLI-VPDNPPYNKGAFRIEINFPAEYPFKPPK 67
            ||::|..::..|:..|...|..:  ::||....|.| .|.:.||..|.|.::|..|.:|||.||.
 Worm     8 RLQRECKEVVTNSEISETGIMIEILNENLTEIKGHIRGPPDTPYAGGMFDLDIKIPDQYPFSPPN 72

  Fly    68 INFKTRIYHPNI-DEKGQVCLPIISTENWKPATRTDQVVQALVDLINDPEPEHPLRAELAEEFLK 131
            :.|.|:|:|||: .:.|.:||.|:. :.|..:.....|:.::..|:..|||:.|..|.:|:::::
 Worm    73 VKFSTKIWHPNVSSQTGVICLDILK-DQWAASLTLRTVLLSIQALMCTPEPKDPQDAVVAKQYME 136

  Fly   132 DRKKFVKNAEDYTKKHSE 149
            ....|...||.:|.|.::
 Worm   137 KPAVFKATAEYWTTKFAK 154

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ubc10NP_477414.1 UQ_con 6..144 CDD:395127 44/141 (31%)
ubc-20NP_497174.1 UQ_con 8..149 CDD:365926 44/141 (31%)
UBA_II_E2_UBE2K_like 163..198 CDD:270498
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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