DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment fab1 and sktl

DIOPT Version :9

Sequence 1:NP_611269.1 Gene:fab1 / 37033 FlyBaseID:FBgn0028741 Length:1809 Species:Drosophila melanogaster
Sequence 2:NP_001286646.1 Gene:sktl / 37356 FlyBaseID:FBgn0016984 Length:792 Species:Drosophila melanogaster


Alignment Length:679 Identity:131/679 - (19%)
Similarity:210/679 - (30%) Gaps:264/679 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly  1267 ELRPEQVQTADSSKVTTSSLPKENDPLECPSEDTETGASNSQTVLDKNFSIDQMLASTVNVYSDK 1331
            ||..|.|...|..|   .....||:|||            :|..|::..                
  Fly     6 ELELEPVGKQDRLK---DQPDDENEPLE------------NQLELEQEH---------------- 39

  Fly  1332 KSIRKILTQL-LPSGNQVNPLQSPFPAQDHLTLPLGSIPIHVRETDLSSVIAY---SLTSMDYQK 1392
               :.:||.: :|.....:|.|...|:...   |:...|...|:....:.:|:   ..||:..| 
  Fly    40 ---KSLLTPVKIPPAQTASPDQEATPSTPP---PMSLQPGTSRQLFRDAAMAHGGQETTSLLQQ- 97

  Fly  1393 AIDEAEANSNAAHSSPQLKRKIPLAESVSDAEDSPSLSRTSSNTSAAPNASVPSPATAASESEEK 1457
                 |.|:.||..:|  ..|:..|.|..||    |:||              :|:|...:.|:|
  Fly    98 -----ELNNIAATQTP--ASKLRSASSTLDA----SISR--------------NPSTTGGKHEKK 137

  Fly  1458 SKERIKQPPSPHITLAFQDHSCQFQCKIYFAREFDAMRSKSLKPPKLDKSLYRRLEKSKMREELR 1522
            ...| :......:|                                     |::::..::...::
  Fly   138 LGHR-RVAEGGEVT-------------------------------------YKKIQSKQIMGSIQ 164

  Fly  1523 IS-QSRTGS---------------EMELVRKPSDVGA--PRTTEDDSNQEEDARIA--------- 1560
            :. |...||               |||.:..|.|..:  |....:|...:..|.||         
  Fly   165 LGIQHTVGSLASKPKRDLLMNDFWEMETISFPPDGSSITPAHHYNDFRFKVYAPIAFRYFRDLFG 229

  Fly  1561 -----LARSLCKSVQWE-ARGGKSGSRFCKTLDDRFVLKEMNSRDMTIFEPFAPKYFEYIDRCQQ 1619
                 ...|:|.|...| :..|.|||.|..|.||.|::|.:..::....:...|.|:..:    .
  Fly   230 IAPDDFLMSMCASPLRELSNPGASGSIFYLTTDDEFIIKTVQKKECEFLQKLLPGYYMNL----S 290

  Fly  1620 QQQPTLLAKIFGVFRVSVKKKDSFVERSVMVMENLF-YGCNIENKFDLKGSE-RNRLVDPSNQQG 1682
            |...|||.|.||::......|:.    .::.|.||. ....:..|:|||||. |.:......|:.
  Fly   291 QNPRTLLPKFFGLYCFHYNSKNV----RLVAMNNLLPSDIKMHCKYDLKGSSFRRKASKAERQKA 351

  Fly  1683 EIVLLDENLVQMSWSKPLYVLSHSKTVLRDAIQRDSSFLEKNLVMDYSLLVG------------- 1734
            .....|.:..: .....:::.:.....|...|:||...||...:||||||||             
  Fly   352 SPTFKDLDFAE-HHPNGIFLETDKYNALMSTIKRDCMVLESFQIMDYSLLVGIHNLDLAAKEKRE 415

  Fly  1735 ---------LDKKNG-------------------------------------------------- 1740
                     |.:|..                                                  
  Fly   416 ERILNARAKLQRKESAAQGPPSLNPDDDAPEADQNQLQAVASYASIPGTSAGAALNRTRSMNRQR 480

  Fly  1741 ----------------------------------------VLVLGIIDYIRTFTLDKRVESIIKG 1765
                                                    :|.:||||.::::.|:|::|...| 
  Fly   481 LVAHSTALESITADMDVPLEEDEDVPAGGIPARSENDERLILYIGIIDILQSYRLEKKLEHTFK- 544

  Fly  1766 SGILGGKGKDPTVVNPERYKQRFIDAMDR 1794
             .|| ..|...:|..|..|.:||.|||.:
  Fly   545 -SIL-YNGDTVSVCRPSFYAKRFQDAMGK 571

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fab1NP_611269.1 FYVE_PIKfyve_Fab1 182..243 CDD:277264
DEP 329..397 CDD:214489
Fab1_TCP 464..717 CDD:239450
PIPKc 1413..1797 CDD:295374 100/529 (19%)
sktlNP_001286646.1 PIPKc 183..573 CDD:214623 82/401 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5253
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

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