DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment OstDelta and swp1

DIOPT Version :9

Sequence 1:NP_611265.1 Gene:OstDelta / 37029 FlyBaseID:FBgn0034277 Length:634 Species:Drosophila melanogaster
Sequence 2:NP_587768.1 Gene:swp1 / 2539265 PomBaseID:SPCC553.06 Length:271 Species:Schizosaccharomyces pombe


Alignment Length:291 Identity:66/291 - (22%)
Similarity:105/291 - (36%) Gaps:69/291 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   369 FKVLGRVKVQSLEVGIAESDASAATRKQSVTYPGKLQEV-------LSADSTQKLLLKAVLVDES 426
            |.:..|....|..|.......|:...:....|..|..::       |:.|.|..|....:| :.:
pombe    10 FLLFARALCASWNVEEGTLQLSSQDLESENAYDLKFSQIQSSTVYELTGDETLNLKFTCIL-NGT 73

  Fly   427 TSKPLAVHQAFVRLYNKKTDKE-----IIFVAEQDSSKAYKFDMDVGNNGKNFNYQSGTYSIYLT 486
            .:.|   |||.:.|    :|.|     :|:.|...                    |.|..|:.|.
pombe    74 GAIP---HQAHLLL----SDTEHPTLAVIYPASVS--------------------QGGVASLELR 111

  Fly   487 VGD--SSLSNSFEWLVAEV----------------QLKFNEDKEVKPKNTSGPLPE------IIH 527
            :.|  :||..|...|.|::                ||..|....:..|....||.|      |:|
pombe   112 LFDIPTSLLRSDSTLTAKLLVASFGETIPFSLPLGQLSINVPPSLYHKAEFSPLDELSPKEVILH 176

  Fly   528 QFRVPDKRPPRIVSDIFTGLCITPLVLLFVFWGKLGINVSNL-TLAPSTIGFHLGFGGILV---L 588
            .|..|.||....:|..|:...:..|:.|...|.|| :..||: :::.|:.....||..:.|   |
pombe   177 TFSPPPKRANYFLSICFSVSVVVSLIGLLGVWQKL-LPKSNVYSVSSSSFARTFGFASLAVAEIL 240

  Fly   589 FFVFWLQLNMFQTLRLLIPIAVFTFLAGNRL 619
            .|::|..|::||.......:|:...:|...|
pombe   241 LFIYWTSLSIFQFGAYAAGVAIMCGIAAKSL 271

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
OstDeltaNP_611265.1 Ribophorin_II 8..623 CDD:283474 66/291 (23%)
swp1NP_587768.1 Ribophorin_II <140..252 CDD:283474 30/112 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2447
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0005725
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_103527
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.710

Return to query results.
Submit another query.