DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5009 and Gcdh

DIOPT Version :9

Sequence 1:NP_611264.2 Gene:CG5009 / 37028 FlyBaseID:FBgn0027572 Length:669 Species:Drosophila melanogaster
Sequence 2:NP_001102366.1 Gene:Gcdh / 364975 RGDID:1308829 Length:447 Species:Rattus norvegicus


Alignment Length:503 Identity:104/503 - (20%)
Similarity:177/503 - (35%) Gaps:160/503 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 PREFSVLWAGGEE-RFKEKKALEKLF-LEDP-ALQDDLPISYLSHKELYEHSLRKAC-------- 74
            ||.:|...|..|: :.:..|:...:| .:|| .|::.|    .:.::|...:.|..|        
  Rat    32 PRTWSSAAAHTEKTQIRSVKSSRPVFDWKDPLVLEEQL----TADEKLIRDTFRNYCQERLMSRI 92

  Fly    75 IIGEKIRKLRAD-----GEDGVDTYNALLG------GSLGSAILKEG--------------NPLA 114
            ::..:......|     ||.||      ||      |..|.:.:..|              :.::
  Rat    93 LLANRNEVFHRDIVYEMGELGV------LGPTIKGYGCAGVSSVAYGLLTRELERVDSGYRSMMS 151

  Fly   115 LHYVMFVPTIMGQGTMDQQVEWLSKAWDCEIIGTYAQTELGHGTFLRGLETRADYDASTQEFVIN 179
            :...:.:..|...|:.:|:.::|.:....|::|.:..||..||:....:||||.::.|.:.:   
  Rat   152 VQSSLVMHPIYTYGSEEQRQKYLPRLAKGELLGCFGLTEPNHGSDPGSMETRARHNPSNKSY--- 213

  Fly   180 TPSLSAYKWWPGGLGHTANHAVVVAQLYTKGEFRGLAPFIVQLRDSDT-------HRPMPGIDIG 237
              :||..|.|      ..|..  ||.|           |:|..|..|.       .:.|.|:...
  Rat   214 --TLSGTKTW------ITNSP--VADL-----------FVVWARCEDNCIRGFLLEKGMRGLSAP 257

  Fly   238 DIGTKLGMKGVNNGYLGLKNVRVPLNNMLMKNQQVLPDGTYVAPKNSVL-------TYGTMMFVR 295
            .|..|..::....|.:.:.:|.||..|       |||:.:.:|.....|       |:|.:....
  Rat   258 RIEGKFSLRASATGMIIMDSVEVPEEN-------VLPNVSSLAGPFGCLNTARYGITWGVLGAAE 315

  Fly   296 CALIRDTAQSLAKASTIATRYSAVRRQSPIDPNQPEPQIMDHTTQQLKL------FPQIAKAIVF 354
            ..|                                      ||.:|..|      .|.....:|.
  Rat   316 FCL--------------------------------------HTARQYALDRIQFGVPLARNQLVQ 342

  Fly   355 KTTGDGIWNMYNVISGEIEQGNL---DR-LPEMHAL---SCCLKAICSADAAAGVETCRLSCGGH 412
            |...|.:..:...:...::.|.|   |: .|||.:|   :.|.||:..|..|..:      .||:
  Rat   343 KKLADMLTEITLGLHACLQLGRLKDQDKATPEMVSLLKRNNCGKALDIARQARDI------LGGN 401

  Fly   413 GYMDCSNFPTI-YGMT-TAVCTYEGENTVMLLQTARYLVKVYGQALNG 458
            |..|  .:..| :.|. .||.||||.:.:..|        :.|:|:.|
  Rat   402 GISD--EYHVIRHAMNLEAVNTYEGTHDIHAL--------ILGRAITG 439

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5009NP_611264.2 AXO 8..645 CDD:173839 104/503 (21%)
PLN02443 10..669 CDD:178062 104/503 (21%)
GcdhNP_001102366.1 GCD 57..443 CDD:173840 98/478 (21%)
CaiA 69..443 CDD:224871 94/466 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1960
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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