DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5009 and Ivd

DIOPT Version :9

Sequence 1:NP_611264.2 Gene:CG5009 / 37028 FlyBaseID:FBgn0027572 Length:669 Species:Drosophila melanogaster
Sequence 2:NP_036724.1 Gene:Ivd / 24513 RGDID:2936 Length:424 Species:Rattus norvegicus


Alignment Length:480 Identity:103/480 - (21%)
Similarity:172/480 - (35%) Gaps:149/480 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 PDLQK-ERSTATFNPREFSVLWAGGEERFKEKKALEKLFLEDPALQDDLPISYLSHKELYEHSLR 71
            |..|: ::|....|.|||   |       |:..:|..|.:..|.......:.||.|         
  Rat    64 PKAQEIDQSNDFKNLREF---W-------KQLGSLGVLGITAPVQYGGSGLGYLEH--------- 109

  Fly    72 KACIIGEKIRKLRADGEDGVDTYNALLGGSLGSAILKEGNPLALHYVMFVPTIMGQGTMDQQVEW 136
              .::.|:|.:.           :|.:|.|.|:           |..:.:..|:..|...|:.::
  Rat   110 --VLVMEEISRA-----------SAAVGLSYGA-----------HSNLCINQIVRNGNEAQKEKY 150

  Fly   137 LSKAWDCEIIGTYAQTELGHGTFLRGLETRADYDASTQEFVINTPSLSAYKWWPGGLGHTANHAV 201
            |.|....|.||..|.:|...|:.:..:..:|  :.....:|:|     ..|:|... |..|:..|
  Rat   151 LPKLISGEFIGALAMSEPNAGSDVVSMRLKA--EKKGDHYVLN-----GNKFWITN-GPDADVLV 207

  Fly   202 VVAQ--LYTKGEFRGLAPFIVQLRDSDTHRPMPGIDIGDIGTKLGMKGVNNGYLGLKNVRVPLNN 264
            |.|:  |......||:..|||:       :.|||........||||:|.|...|..::.:||..|
  Rat   208 VYAKTDLTAVPASRGITAFIVE-------KDMPGFSTSKKLDKLGMRGSNTCELVFEDCKVPAAN 265

  Fly   265 MLMKNQQVLPDGTYVAP-----KNSVLTYGTMMFVRCAL--------IRDT-AQSL-------AK 308
            :|.:..:    |.||..     :..||..|.:..::..|        :|:. .|.:       .|
  Rat   266 ILSQESK----GVYVLMSGLDLERLVLAGGPLGIMQAVLDHTIPYLHVREAFGQKIGQFQLMQGK 326

  Fly   309 ASTIATRYSAVRRQSPIDPNQPEPQIMDHTTQQLKLFPQIAKAIVFKTTGDGIWNMYNVISGEIE 373
            .:.:.||..|.|:.                                         :||| :...:
  Rat   327 MADMYTRLMACRQY-----------------------------------------VYNV-ARACD 349

  Fly   374 QGNLDRLPEMHALSCCLKAICSADAAAGVETCRLSC-GGHGYMDCSNFPTIYGMTTAVCTYE--- 434
            :|::.      |..|....:.:|:.|..|....:.| ||:||:  ::||....:..|. .||   
  Rat   350 EGHIT------AKDCAGVILYTAECATQVALDGIQCLGGNGYI--NDFPMGRFLRDAK-LYEIGG 405

  Fly   435 GENTVMLLQTARYLVKVYGQALNGE 459
            |.:.|..|        |.|:|.|.:
  Rat   406 GTSEVRRL--------VIGRAFNAD 422

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
CG5009NP_611264.2 AXO 8..645 CDD:173839 103/480 (21%)
PLN02443 10..669 CDD:178062 102/478 (21%)
IvdNP_036724.1 IVD 42..421 CDD:173845 102/477 (21%)
PLN02519 43..417 CDD:215284 100/473 (21%)