DRSC/TRiP Functional Genomics Resources

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Protein Alignment HLH54F and ptf1a

DIOPT Version :9

Sequence 1:NP_477302.1 Gene:HLH54F / 37027 FlyBaseID:FBgn0022740 Length:242 Species:Drosophila melanogaster
Sequence 2:NP_997524.1 Gene:ptf1a / 368662 ZFINID:ZDB-GENE-030616-579 Length:265 Species:Danio rerio


Alignment Length:152 Identity:46/152 - (30%)
Similarity:69/152 - (45%) Gaps:24/152 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 RNAANARERMRMRVLSSAYGRLKTKLPNIPPDTKLSKLDTLRLATLYIKQLITAVETGSHSQNHP 97
            |.|||.|||.||:.::.|:..|::.:|.:|.:.:|||:||||||..||..|...|::....:| |
Zfish   117 RQAANVRERRRMQSINDAFEGLRSHIPTLPYEKRLSKVDTLRLAIGYINFLAELVQSDMPIRN-P 180

  Fly    98 HNH--NQHHSLNHSHSSTTSSEGLDTSH----MADSSGGGNYNFHNNGHGMSWPFEFHQSSRSLA 156
            |:.  ||...:...|..|.|....|..:    :|             ||.:||..|.....:::.
Zfish   181 HSDALNQPKKVIICHRGTRSPSPNDPDYGLPPLA-------------GHSLSWTDEKQLKDQNII 232

  Fly   157 FAPSSSTTSSARMDWQTLHTQS 178
            ......|....|    .||.:|
Zfish   233 RTAKVWTPEDPR----KLHLKS 250

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HLH54FNP_477302.1 HLH 32..83 CDD:278439 24/49 (49%)
ptf1aNP_997524.1 HLH 121..173 CDD:197674 23/51 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4029
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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