DRSC/TRiP Functional Genomics Resources

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Protein Alignment HLH54F and hlh-3

DIOPT Version :9

Sequence 1:NP_477302.1 Gene:HLH54F / 37027 FlyBaseID:FBgn0022740 Length:242 Species:Drosophila melanogaster
Sequence 2:NP_495938.4 Gene:hlh-3 / 174447 WormBaseID:WBGene00001950 Length:170 Species:Caenorhabditis elegans


Alignment Length:158 Identity:35/158 - (22%)
Similarity:64/158 - (40%) Gaps:49/158 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 ASSQSSQPPVQRNAANARERMRMRVLSSAYGRLKTKLPNIPPD-TKLSKLDTLRLATLYIKQL-- 83
            :||:||.....:...|.|||.|:..::..:..|:.::|....: .||||::|||.|..||::|  
 Worm    17 SSSKSSVTKQTKQKRNERERKRVDQVNQGFVLLQERVPKAAGNKAKLSKVETLREAARYIQELQK 81

  Fly    84 -------------------------------ITAVETGSHSQNHPH-------NHNQHHSLNHSH 110
                                           ....:|.|.|...|:       :.|||...:|.:
 Worm    82 QLGMSSTSFHNSMPADFPTPEQSPVYPQSVCSMMAQTPSPSYTSPYYPPPQMMSSNQHDMSSHYY 146

  Fly   111 SSTTSSEGLDTSHMADSSGGGNYNFHNN 138
            ..::||..        |:.|.:::|:::
 Worm   147 QESSSSSA--------STSGDHHSFYSH 166

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HLH54FNP_477302.1 HLH 32..83 CDD:278439 17/51 (33%)
hlh-3NP_495938.4 HLH 32..83 CDD:197674 18/50 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4029
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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