DRSC/TRiP Functional Genomics Resources

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Protein Alignment HLH54F and Lyl1

DIOPT Version :9

Sequence 1:NP_477302.1 Gene:HLH54F / 37027 FlyBaseID:FBgn0022740 Length:242 Species:Drosophila melanogaster
Sequence 2:NP_032561.2 Gene:Lyl1 / 17095 MGIID:96891 Length:278 Species:Mus musculus


Alignment Length:97 Identity:36/97 - (37%)
Similarity:47/97 - (48%) Gaps:12/97 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 RKKRSSSPTEFFDDDFDEDASSQSSQPPVQRNAANARERMRMRVLSSAYGRLKTKLPNIPPDTKL 67
            |.||..|.:|.      :.|.....|...:|...|:|||.|.:.::.|:..|:..||..|||.||
Mouse   127 RLKRRPSHSEL------DLADGHQPQKVARRVFTNSRERWRQQHVNGAFAELRKLLPTHPPDRKL 185

  Fly    68 SKLDTLRLATLYIKQLI------TAVETGSHS 93
            ||.:.||||..||..|:      |||.|...|
Mouse   186 SKNEVLRLAMKYIGFLVRLLRDQTAVLTSGPS 217

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HLH54FNP_477302.1 HLH 32..83 CDD:278439 23/50 (46%)
Lyl1NP_032561.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..46
bHLH_TS_LYL1 145..209 CDD:381548 25/63 (40%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 212..278 2/6 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4029
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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