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Protein Alignment HLH54F and msc
DIOPT Version :9
Sequence 1: | NP_477302.1 |
Gene: | HLH54F / 37027 |
FlyBaseID: | FBgn0022740 |
Length: | 242 |
Species: | Drosophila melanogaster |
Sequence 2: | NP_001096235.1 |
Gene: | msc / 100124790 |
XenbaseID: | XB-GENE-978233 |
Length: | 180 |
Species: | Xenopus tropicalis |
Alignment Length: | 179 |
Identity: | 60/179 - (33%) |
Similarity: | 79/179 - (44%) |
Gaps: | 70/179 - (39%) |
- Green bases have known domain annotations that are detailed below.
Fly 3 RKKR----SSSPTEFFDDDFDEDASSQSSQ--PPVQRNAANARERMRMRVLSSAYGRLKTKLPNI 61
::|| |.|| |:...|:||: ...||:|||||||.||||||.|:.||||.||.:
Frog 55 KRKRISRGSQSP--------DKKQPSRSSKDCKQSQRHAANARERARMRVLSKAFSRLKTSLPWV 111
Fly 62 PPDTKLSKLDTLRLATLYIKQLITAVETGSHSQNHPHNHNQHHSLNHSHSSTTSSEGLDTSHMAD 126
|||||||||||||||:.||..|...::...:..::.|..|
Frog 112 PPDTKLSKLDTLRLASSYIAHLRQLLQEDRYENSYVHPVN------------------------- 151
Fly 127 SSGGGNYNFHNNGHGMSWPFEFHQSSRSLAFAP------SSSTTSSARM 169
::||| .|| |..||::.|:
Frog 152 ---------------LTWPF----------VAPGRPDCDSKETTAALRL 175
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
HLH54F | NP_477302.1 |
HLH |
32..83 |
CDD:278439 |
39/50 (78%) |
msc | NP_001096235.1 |
bHLH_SF |
79..144 |
CDD:381792 |
40/64 (63%) |
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
0 | 0.000 |
Not matched by this tool. |
Domainoid |
1 |
1.000 |
81 |
1.000 |
Domainoid score |
I8386 |
eggNOG |
0 | 0.000 |
Not matched by this tool. |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
0 | 0.000 |
Not matched by this tool. |
OrthoFinder |
1 |
1.000 |
- |
- |
|
FOG0004410 |
OrthoInspector |
1 |
1.000 |
- |
- |
|
otm48166 |
Panther |
0 | 0.000 |
Not matched by this tool. |
Phylome |
0 | 0.000 |
Not matched by this tool. |
RoundUp |
1 |
1.030 |
- |
avgDist |
Average_Evolutionary_Distance |
R5029 |
SonicParanoid |
1 |
1.000 |
- |
- |
|
X3129 |
SwiftOrtho |
0 | 0.000 |
Not matched by this tool. |
TreeFam |
0 | 0.000 |
Not matched by this tool. |
|
5 | 5.030 |
|
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