DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment HLH54F and Tcf24

DIOPT Version :10

Sequence 1:NP_477302.1 Gene:HLH54F / 37027 FlyBaseID:FBgn0022740 Length:242 Species:Drosophila melanogaster
Sequence 2:NP_001272354.1 Gene:Tcf24 / 100039596 MGIID:3780500 Length:166 Species:Mus musculus


Alignment Length:125 Identity:40/125 - (32%)
Similarity:56/125 - (44%) Gaps:39/125 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MPRKKRSSSPTEFFDDDFDEDASSQSSQPPVQRN---------------------------AAN- 37
            |.|.:.:|||           .|::|:.||....                           ||| 
Mouse     1 MERGRPASSP-----------RSAESAAPPAAARDWSPGPTGTGPTGLSGVAARSGGGRPAAANA 54

  Fly    38 ARERMRMRVLSSAYGRLKTKLPNIPPDTKLSKLDTLRLATLYIKQLITAVETGSHSQNHP 97
            ||||.|::.|..|:..|:..||::||||||||||.|.|||.||..|..:::..:.:...|
Mouse    55 ARERSRVQTLRHAFLELQRTLPSVPPDTKLSKLDVLLLATTYIAHLTRSLQDDTDAPGDP 114

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HLH54FNP_477302.1 bHLH_TS_musculin_like 32..87 CDD:381429 30/82 (37%)
Tcf24NP_001272354.1 bHLH_TS_TCF24 49..104 CDD:381553 30/54 (56%)

Return to query results.
Submit another query.