DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sardh and Dmgdh

DIOPT Version :9

Sequence 1:NP_611263.1 Gene:Sardh / 37026 FlyBaseID:FBgn0034276 Length:894 Species:Drosophila melanogaster
Sequence 2:NP_083048.1 Gene:Dmgdh / 74129 MGIID:1921379 Length:869 Species:Mus musculus


Alignment Length:877 Identity:265/877 - (30%)
Similarity:425/877 - (48%) Gaps:73/877 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 LQQASRRGISKQVREDGGARREPSGFLPGAADVVVIGGGSAGCHTLYHLARRGVK-AVLLERAQL 70
            |:.:.||..|..:||...:...|..: ...|:.|:||||..|....||||:.|:: .||:|:::|
Mouse    14 LRGSPRRPSSAGLREGQESPASPPEW-KDRAETVIIGGGCVGVSLAYHLAKAGMRDVVLMEKSEL 77

  Fly    71 TAGTTWHTAGLLWRLRPNDVDIQLLANSRRMLQQLEEETELDPGWIQNGGIFIAHNETRLDEYRR 135
            |||:|||.|||.....|.....::..:|.::.::|||||....|:.|.|.|.:|....|:||::.
Mouse    78 TAGSTWHAAGLTTYFHPGINLKKIHYDSIKLYERLEEETGQVVGFHQPGSIRLATTPVRVDEFKY 142

  Fly   136 LATVGSALGIENQVLSPEDTQKLFPLLDPSAFVGALYSPGDGVMDPAMLCAALKKAATNLGAQVI 200
            ..|..:....|..::.||...:|||||:.:..:..||:||||.:||..|..||...|...||.:.
Mouse   143 QMTRTNWHATEQYIIEPEKIHELFPLLNMNKILAGLYNPGDGHIDPYSLTMALAAGARKYGALLK 207

  Fly   201 ENCGVDDLLLEQTARGKKVVGVSTPFGDIKAEKVVNATGVWGRDLVARHGTHLPLVPMKHAYIVS 265
            ....|..|    ..|......|.||.|.::|.::|||.|.|.|::....|...||:|::|.|:|:
Mouse   208 YPAPVTSL----KPRPDGTWDVETPQGSVRANRIVNAAGFWAREVGKMIGLDHPLIPVQHQYVVT 268

  Fly   266 ESIPGV----RGLPNIRDHDYSTYFRIQGDAICMGGYEPNPIL-------LEPVPKDFHFGLYEL 319
            .:||.|    |.||.:||.:.|.|.|.:.|.:..|.||....:       ...||..|...|:|.
Mouse   269 STIPEVKALKRELPVLRDLEGSYYLRQERDGLLFGPYESQEKMKLQASWVTHGVPPGFGKELFES 333

  Fly   320 DWSVFETHVEGAQKLCPSYAKYGVKSTVCGPESFTPDHKPLMGPDPNLDGLYHNCGFNSAGMMFG 384
            |......|:|.|.::.|...|..:.:.|.||.:::||..|::||...:...:...|| ..|::..
Mouse   334 DLDRISDHLEAAMEMIPVLKKADIINVVNGPITYSPDILPMVGPHQGVRNYWVATGF-GYGIIHA 397

  Fly   385 GGCGEQTALWVIQGQPDLPMFGFDLRRFTQEQGK--AIQWIREKSHESYVKNYSMVFKYDQPLAG 447
            ||.|:..:.|::.|:|...:...|..|:    ||  ..|:...|:.|||..|..:.:..::..||
Mouse   398 GGVGKFLSDWILHGEPPFDLIELDPNRY----GKWTTTQYTEAKARESYGFNNIVGYPKEERFAG 458

  Fly   448 RDFQKDPLHDEMMKAGAVMEEKQGWERPGFFLPTGSKKAVVQPYDWYGSYVHQRHKDSEYERVLD 512
            |..|:.....:.:|:...|....|||:|.:|...|                    :|::|.... 
Mouse   459 RPTQRVSGLYKTLKSKCSMGFHAGWEQPHWFYKPG--------------------QDTQYRPSF- 502

  Fly   513 GDLHYSRFSEYHDLIGSEALACRNNAVVFNMSYFAKLLLDGPQAQEAADWLFSANTNRDPSKTVY 577
                  |.:.:.:.:|||.........|.::|.|.|..:.|..:.:..|.|| ||.......|..
Mouse   503 ------RRTNWFEPVGSEYKQVMQRVGVIDLSPFGKFNIKGRDSTQLLDHLF-ANVIPKVGFTNI 560

  Fly   578 TCALNDAGGVEADVTISRLAPGSGEVYNPKINGQGFYIVAGGASAFYTYSVLLAEIRRKGFNASL 642
            :..|...|.|.|::|:|:.:||.            |.::.|..|..:....:.....|.|::..:
Mouse   561 SHMLTPRGRVYAELTVSQQSPGE------------FLLITGSGSELHDLRWIEEAAFRGGYDVEI 613

  Fly   643 KDLTAELGVISIQGPNSRKILQPLIDCDLSDEHVAPNSTRLAKFGDVGLRLLRVSFVGELGYELH 707
            :::|.|.||:.:.||.:|::||.|...||||:......|:.....|:.:..:|:|:.||||:||:
Mouse   614 QNITDEFGVLGVAGPYARRVLQKLTSEDLSDDAFKFLQTKSFNISDIPVTAIRISYTGELGWELY 678

  Fly   708 VPKKDCAAVYRSLMKAGAGEDLRNAGYRSLYSLSSEKGYHLWSFDLRPDDTPLEAGLGFTCR-KT 771
            ..::|.|.:|..:|.||..|.:.:.|..:|.:|..||.:..|..::..|..||||||.:..: ..
Mouse   679 HRREDSATLYERIMSAGQEEGIGDFGTYALNALRLEKAFRAWGSEMNCDTNPLEAGLEYFVKLNK 743

  Fly   772 GADYRGKAAIENQRAEGLKKRLVYLTL-RDQVPIWGLEGVYRNGEPVGILRRAEYAYTLGKSLGQ 835
            .||:.||.|::..:.||||:|||.||: .|.|...|.|.::..|:.||......|:|::.|||..
Mouse   744 PADFIGKQALKQIKTEGLKRRLVCLTVATDDVDPEGNESIWYKGKVVGNTTSGSYSYSIQKSLAF 808

  Fly   836 TYVSRPDGKIIDADYIRNGEYEVDILGKKYRA 867
            .||.....::       ..:.||::|||.|.|
Mouse   809 AYVPVQLSEV-------GQQVEVELLGKNYPA 833

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SardhNP_611263.1 DadA 33..412 CDD:223737 128/390 (33%)
NADB_Rossmann 37..>76 CDD:304358 19/39 (49%)
nuc_hydro 203..>281 CDD:294156 29/81 (36%)
FAO_M 398..449 CDD:292961 14/52 (27%)
GcvT 446..884 CDD:223481 121/424 (29%)
GCV_T 456..767 CDD:279857 82/310 (26%)
GCV_T_C 774..867 CDD:285832 33/93 (35%)
DmgdhNP_083048.1 NADB_Rossmann 38..>83 CDD:304358 19/45 (42%)
DadA 40..428 CDD:223737 130/396 (33%)
FAO_M 410..465 CDD:292961 16/58 (28%)
GCV_T 475..738 CDD:279857 81/302 (27%)
GcvT 481..850 CDD:223481 115/400 (29%)
GCV_T_C 746..838 CDD:285832 34/95 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0404
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53337
OrthoDB 1 1.010 - - D96522at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3396
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.860

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