DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG10931 and nle1

DIOPT Version :10

Sequence 1:NP_611261.1 Gene:CG10931 / 37024 FlyBaseID:FBgn0034274 Length:345 Species:Drosophila melanogaster
Sequence 2:NP_001315445.1 Gene:nle1 / 553606 ZFINID:ZDB-GENE-050522-321 Length:476 Species:Danio rerio


Alignment Length:387 Identity:102/387 - (26%)
Similarity:162/387 - (41%) Gaps:107/387 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    51 SLLGHSGCVTGLKFSSNGENLVSSSGDRLLKLWDLSATRCIQSLAGHGDGVNDVAWSAAG--LIA 113
            ||.||:..|..:.||..|:.|.|.|||..::.||||......:..||...|..:|||..|  |.:
Zfish   100 SLEGHTEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHHTSRGHTHWVLSIAWSPDGKKLAS 164

  Fly   114 SCSDDMTVRLWD-ARSKLCVKVLEGHSRYSFSCCF-----NPQANLLASTSFDETVRLWDVRTGK 172
            .|.:.. :.||| ...|...|.|.||:::....|:     ||:...|||||.|.|:|:||...|.
Zfish   165 GCKNSQ-IFLWDPVTGKQIGKTLTGHTKWITWLCWEPLHLNPECRYLASTSKDCTIRIWDTVLGH 228

  Fly   173 TLKIVHAHQDPITSVDFHRDGNIFVTSSYDGLVRLWDS---------------------STGHVL 216
            ..||:..|...:|.|.:..||.:: |||.|..:::|.:                     ||.:||
Zfish   229 YDKILTGHTHSVTCVKWGGDGLLY-TSSQDRTIKVWRAKDGVQCRTLQGHAHWVNTLALSTDYVL 292

  Fly   217 KT------------------LVDV-----------------------------------DNIPV- 227
            :|                  |.::                                   |..|| 
Zfish   293 RTGAFEPANATINPQDLTGSLEEIKEKALKRYNSVRGEGHERLVSGSDDFTMFLWNPAEDKKPVA 357

  Fly   228 ---GY------VKFSPNGRYILSSTLNNTLRLWNYKKPKCMRTYRGHLNEFY----CSNSNFSTT 279
               |:      |.|||:.|.|.|::.:.::::|:.|..|.:.:.|||:...|    .::|..   
Zfish   358 RLTGHQALVNEVLFSPDTRLIASASFDKSIKIWDGKTGKYLNSLRGHVGPVYQVAWSADSRL--- 419

  Fly   280 GGIWIVSGSEDNTLCIWNLQTRELVQKISTEGDQILSTHCHPTANVIASGALQNSYAIKIWK 341
                :||||.|:||.:|:::|.:|...:....|::.:....|....:|||.  ....::||:
Zfish   420 ----LVSGSSDSTLKVWDIKTGKLNADLPGHADEVFAVDWSPDGQRVASGG--KDKCLRIWR 475

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10931NP_611261.1 WD40 <47..340 CDD:441893 100/384 (26%)
WD40 repeat 59..96 CDD:293791 13/36 (36%)
WD40 repeat 102..137 CDD:293791 12/37 (32%)
WD40 repeat 142..178 CDD:293791 16/40 (40%)
WD40 repeat 185..220 CDD:293791 14/73 (19%)
WD40 repeat 227..263 CDD:293791 12/45 (27%)
WD40 repeat 271..309 CDD:293791 11/37 (30%)
WD40 repeat 314..340 CDD:293791 4/25 (16%)
nle1NP_001315445.1 NLE 8..68 CDD:462380
WD40 77..475 CDD:441893 101/385 (26%)
WD40 repeat 110..145 CDD:293791 12/34 (35%)
WD40 repeat 150..188 CDD:293791 13/38 (34%)
WD40 repeat 194..235 CDD:293791 16/40 (40%)
WD40 repeat 240..275 CDD:293791 9/35 (26%)
WD40 repeat 282..360 CDD:293791 9/77 (12%)
WD40 repeat 366..402 CDD:293791 10/35 (29%)
WD40 repeat 408..444 CDD:293791 12/42 (29%)
WD40 repeat 450..474 CDD:293791 4/25 (16%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.