DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG10931 and Poc1

DIOPT Version :10

Sequence 1:NP_611261.1 Gene:CG10931 / 37024 FlyBaseID:FBgn0034274 Length:345 Species:Drosophila melanogaster
Sequence 2:NP_001261799.1 Gene:Poc1 / 39502 FlyBaseID:FBgn0036354 Length:403 Species:Drosophila melanogaster


Alignment Length:304 Identity:79/304 - (25%)
Similarity:136/304 - (44%) Gaps:49/304 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 AIKHSLLGHSGCVTGLKFSSNGENLVSSSGDRLLKLWDLS-ATRCIQSLAGHGDGVNDVAWSAAG 110
            |::....||||.:|.|:|..:|..:.:||.|..:.||:|: |.|||: .|.|...||.||||..|
  Fly     9 ALERHFTGHSGGITQLRFGPDGAQIATSSTDSTVILWNLNQAARCIR-FASHSAPVNGVAWSPKG 72

  Fly   111 -LIASCSDDMTVRLWDARSKLCVKVLEGHSRYSFSCCFNPQANLLASTSFDETVRLWDVRTGKTL 174
             |:||...|.||::|:.:.:........||:...|..|:...:|:.:.|.|::.::|.|...:.:
  Fly    73 NLVASAGHDRTVKIWEPKLRGVSGEFVAHSKAVRSVDFDSTGHLMLTASDDKSAKIWRVARRQFV 137

  Fly   175 KIVHAHQDPITSVDFHRDGNIFVTSSYDGLVRLWDSSTGHVLKTLVD------------------ 221
            .......:.:.|..|..:|.:..|:|.|..||::|..:|..::|..:                  
  Fly   138 SSFAQQNNWVRSAKFSPNGKLVATASDDKSVRIYDVDSGECVRTFTEERAAPRQLAWHPWGNMLA 202

  Fly   222 -----------------------VDNIPVGYVKFSPNGRYILSSTLNNTLRLWNYKKPKCMRTYR 263
                                   |.:.||..|.|.|:|.::||.:.:.|:|:.:..:.:.:.|..
  Fly   203 VALGCNRIKIFDVSGSQLLQLYVVHSAPVNDVAFHPSGHFLLSGSDDRTIRILDLLEGRPIYTLT 267

  Fly   264 GHLNEFYCSNSNFSTTGGIWIVSGSEDNTLCIW--NLQTRELVQ 305
            ||.:   ..|:...:..|....:|..|..|.:|  ||.|.:..|
  Fly   268 GHTD---AVNAVAFSRDGDKFATGGSDRQLLVWQSNLHTYDASQ 308

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10931NP_611261.1 WD40 <47..340 CDD:441893 79/304 (26%)
WD40 repeat 59..96 CDD:293791 14/37 (38%)
WD40 repeat 102..137 CDD:293791 13/35 (37%)
WD40 repeat 142..178 CDD:293791 7/35 (20%)
WD40 repeat 185..220 CDD:293791 11/34 (32%)
WD40 repeat 227..263 CDD:293791 10/35 (29%)
WD40 repeat 271..309 CDD:293791 10/37 (27%)
WD40 repeat 314..340 CDD:293791
Poc1NP_001261799.1 WD40 <7..298 CDD:441893 74/292 (25%)
WD40 repeat 22..58 CDD:293791 14/36 (39%)
WD40 repeat 63..99 CDD:293791 14/35 (40%)
WD40 repeat 106..140 CDD:293791 7/33 (21%)
WD40 repeat 147..183 CDD:293791 11/35 (31%)
WD40 repeat 189..224 CDD:293791 0/34 (0%)
WD40 repeat 231..254 CDD:293791 8/22 (36%)
WD40 repeat 273..297 CDD:293791 5/23 (22%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.