DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG10931 and Cfap52

DIOPT Version :10

Sequence 1:NP_611261.1 Gene:CG10931 / 37024 FlyBaseID:FBgn0034274 Length:345 Species:Drosophila melanogaster
Sequence 2:NP_001094438.2 Gene:Cfap52 / 303233 RGDID:1308151 Length:620 Species:Rattus norvegicus


Alignment Length:222 Identity:44/222 - (19%)
Similarity:97/222 - (43%) Gaps:52/222 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    59 VTGLKFSSNGENLVSSSGDRLLKLWDL---------------SATRCIQSLAGHGDGVNDVAWSA 108
            ||.:..:|:.:.::|..|:..:::|.:               |:..||:....:.:.|       
  Rat   420 VTAIATTSDCKRIISGGGEGEVRVWQIGCQTQKLEEALKEHKSSVSCIRVKKNNEECV------- 477

  Fly   109 AGLIASCSDDMTVRLWD----ARSKLCVKVLEGHSRYSFSC-CFNPQANLLASTSFDETVRLWDV 168
                 :.|.|.|..:||    .|:::.:      :...|.| |::|:...:.::..|..:..|:|
  Rat   478 -----TASTDGTCIIWDLVRLRRNQMIL------ANTLFQCVCYHPEEFQIITSGTDRKIAYWEV 531

  Fly   169 RTGKTLKIVHAH-QDPITSVDFHRDGNIFVTSSYDGLVRLWDSSTGHVLKTLVDVDNIPVGY--- 229
            ..|..::.:... ...:..:|..::|..|||..:|.|:::||.:.|       :|.::.||:   
  Rat   532 FDGSVIRELEGSLSGSVNGMDITQEGEHFVTGGHDHLIKVWDYNEG-------EVTHVGVGHSGN 589

  Fly   230 ---VKFSPNGRYILSSTLNNTLRLWNY 253
               ::.||..:||:|.:.:..:..|.|
  Rat   590 IMGIRISPGNQYIVSVSADGAILRWKY 616

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10931NP_611261.1 WD40 <47..340 CDD:441893 44/222 (20%)
WD40 repeat 59..96 CDD:293791 9/51 (18%)
WD40 repeat 102..137 CDD:293791 6/38 (16%)
WD40 repeat 142..178 CDD:293791 8/36 (22%)
WD40 repeat 185..220 CDD:293791 10/34 (29%)
WD40 repeat 227..263 CDD:293791 9/33 (27%)
WD40 repeat 271..309 CDD:293791
WD40 repeat 314..340 CDD:293791
Cfap52NP_001094438.2 WD40 46..446 CDD:441893 6/25 (24%)
WD40 repeat 67..108 CDD:293791
WD40 repeat 115..157 CDD:293791
WD40 repeat 162..199 CDD:293791
WD40 repeat 205..302 CDD:293791
WD40 repeat 253..307 CDD:293791
WD40 287..614 CDD:441893 42/218 (19%)
WD40 repeat 380..414 CDD:293791
WD40 repeat 421..459 CDD:293791 5/37 (14%)
WD40 repeat 464..492 CDD:293791 8/39 (21%)
WD40 repeat 500..541 CDD:293791 8/46 (17%)
WD40 repeat 548..584 CDD:293791 11/42 (26%)
WD40 repeat 590..616 CDD:293791 6/25 (24%)
Blue background indicates that the domain is not in the aligned region.

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