DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG10931 and swd3

DIOPT Version :9

Sequence 1:NP_611261.1 Gene:CG10931 / 37024 FlyBaseID:FBgn0034274 Length:345 Species:Drosophila melanogaster
Sequence 2:NP_595227.1 Gene:swd3 / 2540929 PomBaseID:SPBC354.03 Length:380 Species:Schizosaccharomyces pombe


Alignment Length:328 Identity:107/328 - (32%)
Similarity:175/328 - (53%) Gaps:32/328 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    45 GYAIKHSLLGHSGCVTGLKFSSNGENLVSSSGDRLLKLWDLSATRCIQSLAGHGDGVNDVAWSAA 109
            |::...:|.||...||.:..|.|...:.:||.|..:|:|.....|...:|.||..|::.|.|:..
pombe    43 GFSEYCTLFGHEKSVTCVSVSPNKRWIATSSSDGTIKIWSALTFRLECTLFGHYRGISQVKWATG 107

  Fly   110 G-LIASCSDDMTVRLWDARSKLCVKVLEGHSRYSFSCCFNPQANLLASTSFDETVRLWDVRTGKT 173
            . .:||.|||.|:|:||...:..|:.|:||:.|..|..|||...||.|.|:|||||:|:::.|..
pombe   108 SKYLASASDDKTIRIWDFEKRCSVRCLKGHTNYVSSIDFNPLGTLLVSGSWDETVRIWNLQDGTC 172

  Fly   174 LKIVHAHQDPITSVDFHRDGNIFVTSSYDGLVRLWDSSTGHVLKTLVDVDNIPVGYVKFSPNGRY 238
            |:::.||.:||.||....||.:..|:||||:.|:||..:|..|||||:..|:|:..::|:.|.:|
pombe   173 LRMLPAHSEPIISVSISADGTLCATASYDGMARIWDVLSGQCLKTLVEPINVPLSNLQFTENRKY 237

  Fly   239 ILSSTLNNTLRLWNYKKPKCMRTYRGHLNEFY-----C-SNSNF-------------------ST 278
            :|.|.||:.:|||:|::.:.:|.:..|:|..|     | |:.|.                   |.
pombe   238 LLVSNLNSQIRLWDYRRNRVVRIFDSHVNTRYSMSWDCYSSKNIPKNTEALPNNDSSYPDDAESF 302

  Fly   279 TGGIWIVSGSEDNTLCIWNLQTRELVQKISTEGDQILSTHCHPTA---NVIASGALQNSYAIKIW 340
            ....:::..|||.|:.|.:..|:.::.......|...::..:.|:   .:|.||.  :.| :::|
pombe   303 MHDAYLLIPSEDGTIQITDPSTKIIIDDSIRHSDDPETSLLNVTSLGPFIITSGT--DPY-VRVW 364

  Fly   341 KSS 343
            ..|
pombe   365 APS 367

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10931NP_611261.1 WD40 <48..341 CDD:225201 104/321 (32%)
WD40 49..341 CDD:238121 104/320 (33%)
WD40 repeat 59..96 CDD:293791 11/36 (31%)
WD40 repeat 102..137 CDD:293791 13/35 (37%)
WD40 repeat 142..178 CDD:293791 16/35 (46%)
WD40 repeat 185..220 CDD:293791 16/34 (47%)
WD40 repeat 227..263 CDD:293791 12/35 (34%)
WD40 repeat 271..309 CDD:293791 10/57 (18%)
WD40 repeat 314..340 CDD:293791 5/28 (18%)
swd3NP_595227.1 WD40 5..379 CDD:225201 107/328 (33%)
WD40 46..365 CDD:238121 104/321 (32%)
WD40 repeat 57..94 CDD:293791 11/36 (31%)
WD40 repeat 100..136 CDD:293791 13/35 (37%)
WD40 repeat 141..177 CDD:293791 16/35 (46%)
WD40 repeat 184..219 CDD:293791 16/34 (47%)
WD40 repeat 226..262 CDD:293791 12/35 (34%)
WD40 repeat 269..333 CDD:293791 11/63 (17%)
WD40 repeat 339..364 CDD:293791 5/27 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0266
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 238 1.000 Inparanoid score I823
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002159
OrthoInspector 1 1.000 - - otm47267
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR22847
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
76.920

Return to query results.
Submit another query.