DRSC/TRiP Functional Genomics Resources

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Protein Alignment Snx16 and MDM1

DIOPT Version :10

Sequence 1:NP_611252.1 Gene:Snx16 / 37015 FlyBaseID:FBgn0034265 Length:407 Species:Drosophila melanogaster
Sequence 2:NP_013603.1 Gene:MDM1 / 854867 SGDID:S000004572 Length:1127 Species:Saccharomyces cerevisiae


Alignment Length:446 Identity:89/446 - (19%)
Similarity:164/446 - (36%) Gaps:120/446 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 LRALRKRETGTGYGNNNN----HLAAPARTSQATLFKKA-------STAITSPKKSLLKTGNSVC 56
            :..::.:|..:.:.:|||    .|..........||:.:       .|.|.:.|..||....::.
Yeast   485 ISTMQLQEISSKFFHNNNLQNMKLLDEGLVKNIILFRNSFQINNDEDTFILARKSVLLLQTEAIK 549

  Fly    57 GLDKR--SQFREQ----KLLGRKCHSSPD-----LRQIGKYQN---NSLLRSKSEGDV--SLILA 105
            .||.|  ..|::.    |:|......|.|     |.:||...|   |.:::...:.|.  .:.:.
Yeast   550 YLDDRFLPLFKKTPSFLKMLSTSHIISTDIYAHFLSRIGGVNNPEQNKIIKDNVKTDFMNPVRIF 614

  Fly   106 SNSGAPLTVAN----AKSEVCLQRISSHSYEQSPRTPINKSEMLGGARSH--RDLTQSSYGNQAG 164
            :|.|....:.|    :.|:....||||     :||    .|::.|....:  :|.......:...
Yeast   615 ANPGITDALDNIVNGSGSKPHKSRISS-----NPR----YSQLFGSENDNIFKDKLFDDENDNTS 670

  Fly   165 GHSVDLESRSRTPRRMSECSLGYSQSS---SRHTGSNSM---FASQMTLSSGSVVPPVD------ 217
            ..|| :|.:...||.|.:.|:....|.   |:..|||:.   .|| :|:|...:...::      
Yeast   671 EISV-VEDQLDHPRNMEKVSVSSGNSGLNPSQFYGSNNFRDNIAS-LTISIDQIEKELELLRHLI 733

  Fly   218 -----PNAVLRVPII-------------------GYEVMEE------------RARF-------- 238
                 .|..:::.|:                   .|.|.|.            |:.|        
Yeast   734 LKADLTNNQMQLKILKKSQRTLLKELEMKELLKQQYMVQENGNSLFRKTKIYIRSYFSENSSNGL 798

  Fly   239 ---TAYKLRV---ENPETNDYWLVMRRYTDFVRLNSKLKQAFPNLTLML----PRKKLFGDNFN- 292
               |.|.:.:   .|.:.:. |.:.|||.:|..||:.||:.|.:|...|    |.|......:: 
Yeast   799 KEITYYIINIHHFNNGQVSS-WDMARRYNEFFELNTYLKKNFRDLMRQLQDLFPSKVKMSLKYHV 862

  Fly   293 --AVFLDNRVQGLQIFVNSVMAKEELRKCKLVREF------FCLDEPPSYSESMEE 340
              .:..:.|.|.|:.::..:::..|:.:..:.|.|      |.|::...:.:.:||
Yeast   863 TKTLLYEERKQKLEKYLRELLSISEICEDNIFRRFLTDPTPFKLNKEYMHDDILEE 918

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Snx16NP_611252.1 PX_SNX16 219..329 CDD:132809 31/167 (19%)
MDM1NP_013603.1 PXA 85..276 CDD:214611
RGS 462..567 CDD:470619 16/81 (20%)
PX_MDM1p 763..900 CDD:132786 28/137 (20%)
Nexin_C 993..1106 CDD:462541
Blue background indicates that the domain is not in the aligned region.

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