DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Snx16 and AT1G15240

DIOPT Version :9

Sequence 1:NP_611252.1 Gene:Snx16 / 37015 FlyBaseID:FBgn0034265 Length:407 Species:Drosophila melanogaster
Sequence 2:NP_001154343.1 Gene:AT1G15240 / 838091 AraportID:AT1G15240 Length:1020 Species:Arabidopsis thaliana


Alignment Length:336 Identity:78/336 - (23%)
Similarity:132/336 - (39%) Gaps:67/336 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   107 NSGAPLTVANAKSEVCLQRISSHSYE----------QSPRTPI---NKSEMLGGARSHRDLTQSS 158
            |:.:.|:..::..|...|..|||||.          .||.|.:   ...:.||.:|.|..|..|.
plant   464 NTDSHLSSYSSAEEDEEQTKSSHSYTSEDEETVTGLNSPGTRVWDGRTKKNLGVSRIHHPLENSG 528

  Fly   159 Y----------------GNQAG-------GHSVDLESRSRTPRRMSECSLGYSQSSSRHTGSNS- 199
            .                |:|:|       ||.:|.:....:    .:.||..|.|....|.|.| 
plant   529 RSLKKTSKGHERYQQVPGHQSGRKRSRISGHIIDDDDSDDS----EDGSLTRSYSGMSATSSTSY 589

  Fly   200 MFASQMTLSS---GSVVPPVDPNAVLRVPIIGYEVMEERAR-FTAYKLRVENPETNDYWLVMRRY 260
            :.|::..|.:   .|::  ||..|.||..::|..:::..:: |..|.:.|.: |:|..|.:.||:
plant   590 VSAAESDLPNAPKSSLL--VDSFAKLRCEVLGANIVKGSSKMFAVYSVAVTD-ESNHSWSIKRRF 651

  Fly   261 TDFVRLNSKLKQAFPNLTLMLPRKKLFGDNFNAVFLDNRVQGLQIFVNSVMAKEELRKCKLVREF 325
            ..|..|:.:|| .||...|.||.|.......:...:..|...|..::..::..:.:.....|.:|
plant   652 RHFEELHRRLK-VFPEYKLHLPPKHFLSTGVDIPVIQERCVLLDEYIKKLLQLQRISGSIEVWDF 715

  Fly   326 FCLDEPPSYSESMEECRAIFEAQEETIEHLKLQIRNKNDL----ILSLQQKLREEMNEKEQLRE- 385
            ..:|. .:|:         |.:....||.|.::..||...    |.|:.|.....:..:|.|.. 
plant   716 LSVDS-QTYA---------FSSSFSIIETLTVKPVNKTSTVATNIASMTQAAPGPLPRRENLSSE 770

  Fly   386 ---AMKNMELN 393
               :.:||..|
plant   771 NGISGQNMRNN 781

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Snx16NP_611252.1 PX_SNX16 219..329 CDD:132809 26/110 (24%)
AT1G15240NP_001154343.1 PXA 107..282 CDD:280373
PX_SNX19_like_plant 613..725 CDD:132782 27/123 (22%)
Nexin_C 858..978 CDD:285792
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 46 1.000 Domainoid score I4596
eggNOG 1 0.900 - - E1_KOG2101
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0005432
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR22999
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.910

Return to query results.
Submit another query.