DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rdgBbeta and PAH1

DIOPT Version :10

Sequence 1:NP_611248.3 Gene:rdgBbeta / 37011 FlyBaseID:FBgn0027872 Length:273 Species:Drosophila melanogaster
Sequence 2:NP_013888.1 Gene:PAH1 / 855201 SGDID:S000004775 Length:862 Species:Saccharomyces cerevisiae


Alignment Length:172 Identity:42/172 - (24%)
Similarity:63/172 - (36%) Gaps:39/172 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 LEQSEEGEGVEVVENKP-----CEDP----VHGKGQYTEKHIHLSSRLPYWIQAICPRVFYVIEK 86
            ||...||||....|||.     .|:|    ::..|....|:...:..|.            ..|.
Yeast   120 LEGGTEGEGEGENENKKKEKKVLEEPDFLDINDTGDSGSKNSETTGSLS------------PTES 172

  Fly    87 SWNYYPYTLTE------YTCSFIPKLN-----VLIKTKYEDNNGSTENCLDLTEDELKVRTVDH- 139
            |....|.::.|      .|.:|..|||     :.|.:|. ||||  :..|| ||.....:.:.| 
Yeast   173 STTTPPDSVEERKLVEQRTKNFQQKLNKKLTEIHIPSKL-DNNG--DLLLD-TEGYKPNKNMMHD 233

  Fly   140 LDIAFDEVSAKHYKKEED-PKFFKSEKTNRGPLIEGWRE-TD 179
            .||...::....:..:.| ..|.|.:|.....::..:.. ||
Yeast   234 TDIQLKQLLKDEFGNDSDISSFIKEDKNGNIKIVNPYEHLTD 275

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdgBbetaNP_611248.3 SRPBCC 3..252 CDD:472699 42/172 (24%)
PAH1NP_013888.1 Lipin_N 1..103 CDD:461356
LNS2 349..583 CDD:462403
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.