DRSC - DRSC Integrative Ortholog Prediction Tool

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Protein Alignment rdgBbeta and rdgB

DIOPT Version :9

Sequence 1:	NP_611248.3	Gene:	rdgBbeta / 37011	FlyBaseID:	FBgn0027872	Length:	273	Species:	Drosophila melanogaster
Sequence 2:	NP_001259535.1	Gene:	rdgB / 32340	FlyBaseID:	FBgn0003218	Length:	1297	Species:	Drosophila melanogaster

Alignment Length:	288	Identity:	126/288 - (43%)
Similarity:	177/288 - (61%)	Gaps:	27/288 - (9%)

- Green bases have known domain annotations that are detailed below.

  Fly     2 VLIKEYRVCMPLTVEEYKIGQLYMIARHSLEQSE-EGEGVEVVENKPCEDPVHGKGQYTEKHIHL 65
            :||||||:.:|||||||:|.||||||:.|.|:|. ||.|||::.|:|.:|...|.||||:|..|:
  Fly     1 MLIKEYRIPLPLTVEEYRIAQLYMIAKKSREESHGEGSGVEIIINEPYKDGPGGNGQYTKKIYHV 65

  Fly    66 SSRLPYWIQAICPR-VFYVIEKSWNYYPYTLTEYTCSFIPKLNVLIKTKYEDNNGSTENCLDLTE 129
            .:.||.||:::.|: ...|.|::||.||||.|.|||.|:.|.::.|:|.|..:||..:|...|:.
  Fly    66 GNHLPGWIKSLLPKSALTVEEEAWNAYPYTRTRYTCPFVEKFSLDIETYYYPDNGYQDNVFQLSG 130

  Fly   130 DELKVRTVDHLDIAFDEVSAKHYKKEEDPKFFKSEKTNRGPLIEGWRE--------------TDK 180
            .:|:.|.||.:||..|::....|.||||||.|.|:||.||||.|.|.|              .:.
  Fly   131 SDLRNRIVDVIDIVKDQLWGGDYVKEEDPKHFVSDKTGRGPLAEDWLEEYWREVKGKKQPTPRNM 195

  Fly   181 PIMCSYKVVHASFEVWGLQTKVEDFIQR-GIREILLLGHRQAFAWVDEWHGMTLEDVRAYERQKQ 244
            .:|.:||:....|..||:|||:|.||.. .:|:::|..||||:||.|||.|:|:||:|..|||.|
  Fly   196 SLMTAYKICRVEFRYWGMQTKLEKFIHDVALRKMMLRAHRQAWAWQDEWFGLTIEDIRELERQTQ 260

  Fly   245 AETNEKIHNTSGGANAAANAKEANDGDI 272
            ....:|:    ||      .:|.:|..:
  Fly   261 LALAKKM----GG------GEECSDDSV 278

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
rdgBbeta	NP_611248.3	SRPBCC	3..252	CDD:301327	122/265 (46%)
rdgB	NP_001259535.1	SRPBCC_PITPNM1-2_like	1..268	CDD:176898	122/270 (45%)
		DDHD	746..924	CDD:280937
		LNS2	1072..1203	CDD:197870
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C45455371
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG5083
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D105030at6656
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	P	PTHR10658
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	5	4.850