DRSC/TRiP Functional Genomics Resources

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Protein Alignment rdgBbeta and Pitpnm2

DIOPT Version :10

Sequence 1:NP_611248.3 Gene:rdgBbeta / 37011 FlyBaseID:FBgn0027872 Length:273 Species:Drosophila melanogaster
Sequence 2:XP_038945373.1 Gene:Pitpnm2 / 304474 RGDID:1310867 Length:1385 Species:Rattus norvegicus


Alignment Length:257 Identity:112/257 - (43%)
Similarity:163/257 - (63%) Gaps:7/257 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 VLIKEYRVCMPLTVEEYKIGQLYMIARHSLEQS-EEGEGVEVVENKPCEDPVHGKGQYTEKHIHL 65
            ::|||||:.:|:|||||:|.|||||.:.|..:: .:|.|||::||:|..|...|.||||.|..|:
  Rat     1 MIIKEYRIPLPMTVEEYRIAQLYMIQKKSRNETYGQGSGVEILENRPYTDGPGGSGQYTHKVYHV 65

  Fly    66 SSRLPYWIQAICPR-VFYVIEKSWNYYPYTLTEYTCSFIPKLNVLIKTKYEDNNGSTENCLDLTE 129
            ...:|.|.::|.|: ...|:|:|||.||||.|.:||.|:.|.::.|:|.|:.:.|...|..:|:.
  Rat    66 GMHIPGWFRSILPKAALRVVEESWNAYPYTRTRFTCPFVEKFSIDIETFYKTDTGENNNVFNLSP 130

  Fly   130 DELKVRTVDHLDIAFDEVSAKHYKKEEDPKFFKSEKTNRGPLIEGWRETDK----PIMCSYKVVH 190
            .|......|.:||..|.|:...||.|||||.|:|.||.||||.|.|.:..|    ||||:||:..
  Rat   131 VEKNQLITDIIDIVKDPVTPSEYKTEEDPKLFQSIKTRRGPLSENWIQEYKKRLLPIMCAYKLCK 195

  Fly   191 ASFEVWGLQTKVEDFI-QRGIREILLLGHRQAFAWVDEWHGMTLEDVRAYERQKQAETNEKI 251
            ..|..||:|:|:|.|| ..|:|.:::..||||:.|.|||:|:|:|.:|..|::.|...:.|:
  Rat   196 VEFRYWGMQSKIERFIHDTGLRRVMVRAHRQAWCWQDEWYGLTMEKIRELEKEVQLMLSRKM 257

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdgBbetaNP_611248.3 SRPBCC 3..252 CDD:472699 112/256 (44%)
Pitpnm2XP_038945373.1 SRPBCC_PITPNM1-2_like 1..258 CDD:176898 112/257 (44%)
DDHD 701..998 CDD:460725
LNS2 1144..1275 CDD:197870
Blue background indicates that the domain is not in the aligned region.

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