DRSC/TRiP Functional Genomics Resources

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Protein Alignment swi2 and kek2

DIOPT Version :9

Sequence 1:NP_611247.3 Gene:swi2 / 37010 FlyBaseID:FBgn0034262 Length:499 Species:Drosophila melanogaster
Sequence 2:NP_523551.1 Gene:kek2 / 34582 FlyBaseID:FBgn0015400 Length:894 Species:Drosophila melanogaster


Alignment Length:304 Identity:64/304 - (21%)
Similarity:109/304 - (35%) Gaps:96/304 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    84 KCYGGMNNLAALNQSGKLSRVQPALEMLLCGWPKDGLNHFRDLQKLPRLRSLT------IEYSGF 142
            |.:.|:.||..|:.|          |..|...|.:   .|:|...|.|| ||:      ::.|.|
  Fly    96 KAFRGLTNLVELDLS----------ENALQNVPSE---TFQDYSSLMRL-SLSGNPIRELKTSAF 146

  Fly   143 TEFKFDFPEMLELHTINISWTNLSYISSRTFKRVHPLKVLDLRWNQLIQLDGPLLLPRNFEQLYL 207
            ....|       |.|:.:|...:..|.:..|..:..|:.|.|..|::..:.|..:||::...:.|
  Fly   147 RHLSF-------LTTLELSNCQVERIENEAFVGMDNLEWLRLDGNRIGFIQGTHILPKSLHGISL 204

  Fly   208 AGNPWNCTRNFK----WLL------------LQPE--KGRLV--VDRDELICTDRKYKERQMLMV 252
            ..|.|||.....    ||:            ::|.  ||:::  :.|::|.|..           
  Fly   205 HSNRWNCDCRLLDIHFWLVNYNTPLAEEPKCMEPARLKGQVIKSLQREQLACLP----------- 258

  Fly   253 MHYKLELKRQCQSHE--DLRN--CTCLMHHILPKTHIPLYTVNCSHLQFHRLPDFLPDNTTTLVI 313
                 |:..|....|  :.||  .|||:..|                         |:.....:.
  Fly   259 -----EVSPQSSYTEVSEGRNMSITCLVRAI-------------------------PEPKVLWLF 293

  Fly   314 NDNMISDINPLRDNPHYRHVVDMQLENNQISNVDNLEDTYWLQN 357
            |..::|: :.|.||.|..:.:|   |...:|..:......::.|
  Fly   294 NGQVMSN-DSLMDNLHMYYYID---ETIGVSGAEEKRSEIFIYN 333

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
swi2NP_611247.3 LRR <117..384 CDD:227223 55/271 (20%)
leucine-rich repeat 132..154 CDD:275378 6/27 (22%)
leucine-rich repeat 155..178 CDD:275378 5/22 (23%)
leucine-rich repeat 179..201 CDD:275378 7/21 (33%)
leucine-rich repeat 202..214 CDD:275378 3/11 (27%)
leucine-rich repeat 287..307 CDD:275378 1/19 (5%)
leucine-rich repeat 308..332 CDD:275378 6/23 (26%)
leucine-rich repeat 333..357 CDD:275378 3/23 (13%)
leucine-rich repeat 358..385 CDD:275378 64/304 (21%)
leucine-rich repeat 386..398 CDD:275378
kek2NP_523551.1 leucine-rich repeat 34..52 CDD:275380
leucine-rich repeat 54..79 CDD:275380
LRR_8 79..138 CDD:290566 16/55 (29%)
LRR_RI <80..187 CDD:238064 28/111 (25%)
leucine-rich repeat 80..103 CDD:275380 2/6 (33%)
leucine-rich repeat 104..127 CDD:275380 8/35 (23%)
LRR_8 126..186 CDD:290566 17/67 (25%)
leucine-rich repeat 128..151 CDD:275380 7/23 (30%)
leucine-rich repeat 152..175 CDD:275380 5/22 (23%)
leucine-rich repeat 176..198 CDD:275380 7/21 (33%)
TPKR_C2 207..256 CDD:301599 11/48 (23%)
I-set 258..361 CDD:254352 20/121 (17%)
Ig_2 263..361 CDD:290606 19/100 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24366
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

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