DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema1b and sema3fb

DIOPT Version :9

Sequence 1:NP_001163178.1 Gene:Sema1b / 37007 FlyBaseID:FBgn0016059 Length:770 Species:Drosophila melanogaster
Sequence 2:XP_009304469.2 Gene:sema3fb / 799945 ZFINID:ZDB-GENE-050513-2 Length:791 Species:Danio rerio


Alignment Length:596 Identity:188/596 - (31%)
Similarity:295/596 - (49%) Gaps:76/596 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 MLVNAI-PMILLITLSGLTIVAGWMPDVKP-------DLQTKQDKVLAHFIGNSTDYFKIL--DH 66
            ||:::: |:.:|:.||.||:|.|..|...|       ||::........|:.|::|| :||  |.
Zfish     1 MLLDSLWPVQVLLVLSVLTLVLGNEPQNAPRVFLSFKDLRSTGTAHYFSFLLNTSDY-RILRMDE 64

  Fly    67 NDEFVLVGAKDVIYNVSLNGL-KEIARLEWHSTDADRELCALKGKH-EWDCHNYLRVYALRPNGE 129
            :.:.:.||:||.|.::.|:.: :|...:.|..:...:..|.|.||. ..:|.|::|:........
Zfish    65 DHDRMYVGSKDYILSLDLHDINREPLIIHWPVSPQRKTECVLSGKDTNGECGNFIRLIEPWNRTH 129

  Fly   130 VLLCGTNSYKPRCRH-------YTPVEVSSEEA-GSAGHA--------------HAMRYEVSRDV 172
            :.:|||.:|.|.|.:       .|.:.:...:. |.|..|              :....|..::.
Zfish   130 LYICGTGAYNPVCTYVNRGRKPMTAMHLQMPQTRGRASRAAEPETVFDETGLQEYVFHLEPGKED 194

  Fly   173 EAQGLCPYSPAHNSTYAFADGHLYSATVADFSGGDPLIYR---EN--LRTEQYDLKQLNQPDFV- 231
            ..:|.|||.|..||..|..:|.||:....||.|.|..|:|   :|  :||:||:.:.||.|.|| 
Zfish   195 SGKGKCPYDPKLNSVSALINGELYAGVYIDFMGTDSAIFRTLGKNAVMRTDQYNSRWLNDPSFVH 259

  Fly   232 -----GAIERNGYVL-FFFRELSMEVMNFGKAVYSRVARVCKNDRGGPYSHGKSWTSFLKARLNC 290
                 .:.|:|...| |||||.|.|:....|: .||:.|:|.||.||.......|::||||||.|
Zfish   260 VHLIPDSGEKNDDKLYFFFREKSSEMGQSPKS-QSRIGRICLNDDGGHCCLVNKWSTFLKARLIC 323

  Fly   291 SVPGE--FPFYFDEIQ--AISPIVESGSKSLIYAVFTTSVNAIPGSAVCAFNVDDILAAFDGEFK 351
            ||||.  ...:|||::  .|.| .:.....:||.||:.|.:...|||||.:::.||...|:|.|.
Zfish   324 SVPGADGIETHFDELRDVYIQP-TQDTKNPVIYGVFSVSGSVFKGSAVCVYSMADIRMVFNGPFA 387

  Fly   352 SQKDSQSHWLPVEREQVPKPRPGQC--------VEDSRTLTSIAVNFIKNHPLMEEAVPAVHGRP 408
            .::.....|: ....::|.||||.|        ::.::......:||::|||.|..:|..||.||
Zfish   388 HKEGPNYQWV-AYTGKIPYPRPGTCPGGTFTPNMKSTKDYPDEVINFMRNHPTMYNSVYPVHKRP 451

  Fly   409 LLTKVNLHHRLTAIAVHPQVKSLSGAYYDVIYSGTDDGKVTKFINILSTHPNSTVDRLKT--VVI 471
            |:.:.|:.:..|.|.| .||.:..| .|:|::.|||.|.|.|.|.:.|       |.|:|  :|:
Zfish   452 LVVRTNVDYEFTTITV-DQVTAADG-NYEVLFLGTDKGTVQKVIVLPS-------DDLQTEELVL 507

  Fly   472 SEMQVLPLGTPIRELVISTSKNSLVVVSDGSLVSVPLHHCSHIVD-CLGCLSLQDPICAWDLQTH 535
            .|::|..:.|.|..:.||:.:..|.|.|...:..:.||.|....: |..|...:||.||||.:: 
Zfish   508 EEVEVFKVPTSITTMKISSKRQQLYVASAVGVTHMALHRCDVYGEACADCCLARDPYCAWDGKS- 571

  Fly   536 ECKNLATSQHK 546
             |...:.||.:
Zfish   572 -CSRYSASQKR 581

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema1bNP_001163178.1 Sema_1A 55..511 CDD:200498 161/507 (32%)
PSI 510..>537 CDD:214655 9/27 (33%)
sema3fbXP_009304469.2 Sema_3F 48..547 CDD:200515 162/511 (32%)
PSI 546..>582 CDD:214655 12/38 (32%)
Ig_Semaphorin_classIII 612..700 CDD:143279
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3611
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11036
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.910

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