DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema1b and sema4aa

DIOPT Version :10

Sequence 1:NP_611244.1 Gene:Sema1b / 37007 FlyBaseID:FBgn0016059 Length:770 Species:Drosophila melanogaster
Sequence 2:XP_009290884.1 Gene:sema4aa / 798168 ZFINID:ZDB-GENE-110411-86 Length:739 Species:Danio rerio


Alignment Length:705 Identity:182/705 - (25%)
Similarity:294/705 - (41%) Gaps:157/705 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    63 ILDHNDEFVLVGAKDVIYNVSLNGLKEIA---RLEWHSTDADRELCALKGKHEWDCHNYLRVYAL 124
            :|..:::.:.|||:|.::::.::....|.   .|:|..:....:.|.:..|  .||.|::.:...
Zfish    55 LLSTDEDTLFVGARDALFSLDVSQSDSITLKDELKWTPSSDQTKTCRVASK--LDCGNFISILQF 117

  Fly   125 RPNGEVLLCGTNSYKPRCRHYTPVEVSSEEAGSAGHAHAMRYEVSRDVEAQGLCPYSPAHNSTYA 189
            ..:..:..||||:|||:.   ..:..||..|           .:.:. :|:..||:|....:|..
Zfish   118 FNSTHLYACGTNAYKPQA---IIIPASSLNA-----------NIDKK-DAKNCCPFSSTQRNTAI 167

  Fly   190 FADGHLYSATVADFSGGDPLIYR-------ENLRTEQYDLKQLNQPDFVGA--IERNGYVLFFFR 245
            ..||.||:||...|.|...:|.|       .||..|... |.|.:|.|:.:  :...|.:|.||.
Zfish   168 IVDGELYTATNVGFFGDKNVISRCHSRGTHNNLELETVP-KLLQEPVFISSTHVASEGKILLFFT 231

  Fly   246 E---LSMEVMNFGKA-VYSRVARVCKNDRGGPYSHGKSWTSFLKARLNCSVPGEFPFYFDEIQAI 306
            |   ||.:.  ||.: ..||||:||.:|.||..:..:.||||.||:|.|. .|| ...|:::|.|
Zfish   232 ENGDLSGDY--FGNSFTVSRVAQVCTDDNGGTLTLQRRWTSFAKAQLVCQ-QGE-DLQFNKLQDI 292

  Fly   307 SPIVESGS----KSLIYAVFTTSVNAIPG-SAVCAFNVDDILAAFDGEFKSQKDSQSHWLPVERE 366
            ..:..|.|    |:|.|.|||:..:...| ||||||::.||.|||.|.:|:.....:||      
Zfish   293 VKLSPSDSDSPDKTLFYGVFTSQRSVSSGLSAVCAFSLTDIKAAFSGNYKTFDLRGNHW------ 351

  Fly   367 QVPKPRP------GQC--VEDSRTLTSIAVNFIKNHPLMEEAVPAVHGRPLLTKVNLHHRLTAIA 423
               .|:|      |:|  ..|    |...:|.:|...|.|..|..:....||:  :...:.|.:|
Zfish   352 ---SPQPNTDGKLGKCGLFND----TDSVLNRVKKSFLTENVVHPMDKTLLLS--SAEEQYTRLA 407

  Fly   424 VHPQVKSLSGAYYDVIYSGTDDGKVTKFINILSTHPNSTVDRLKTVVISEMQVLPLGTPIRELVI 488
            || :.:::.|..|.::|..|:.|.:.|.: :|:..|:         :|.|:|:.......:.:::
Zfish   408 VH-RAQAVDGQTYTILYLLTESGFLHKVV-LLAEGPH---------IIEEIQIFKQPQIAKNILL 461

  Fly   489 STSKNSLVVVSDGSLVSVPLHHCSHIVDCLGCLSLQDPICAWDLQTHECKNLATSQHKFGTKTYL 553
            |.||:.|.:.|...:..|||.:||...:|..|:..:||.||||.:|..|  .|.|:.|...:..:
Zfish   462 SKSKSVLFIGSSEGVFRVPLSNCSAYPNCAECVLARDPFCAWDTETRAC--TAVSETKSTLRQDV 524

  Fly   554 QSLNST------KKAAALL-------------CPHIPRDAPGAETVSFVTMAP------------ 587
            :..|.|      :..||:|             |....:.|......|..::.|            
Zfish   525 ERGNVTEQCIEFRNTAAVLFKTAHLNEIVVLPCQSKSKLAKMTWRFSNNSLVPQFPYLQWTDGSL 589

  Fly   588 --PPTEEQKLLYSNVGSSQGNQPSL------------------EQQPTGGDDFGLNKITLTSMDP 632
              |.:.|....|..|....|.|.::                  .|||        ..|..|:::.
Zfish   590 VFPVSLETTNTYRCVSEELGFQQTIATFSVNLPVVPRSRMSPSHQQP--------EHIDFTTIEL 646

  Fly   633 DDIMP----------------NLNDPQKSTASVDEIKYASTPSFMLLTTIVFFTF 671
            |:..|                ..:|..|.|..:.:..|.|.   |:...|.|..|
Zfish   647 DESEPINEEKINDRSEEKQASTYHDAGKDTLCISQKSYYSE---MVAVCIFFVIF 698

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema1bNP_611244.1 Sema_1A 55..511 CDD:200498 136/476 (29%)
PSI 510..>537 CDD:214655 11/26 (42%)
sema4aaXP_009290884.1 Sema_4 43..482 CDD:200501 135/474 (28%)
PSI 483..527 CDD:214655 15/45 (33%)
Ig_Sema4B_like 540..624 CDD:409456 13/83 (16%)
Ig strand A 540..546 CDD:409456 3/5 (60%)
Ig strand B 550..558 CDD:409456 0/7 (0%)
Ig strand C 564..570 CDD:409456 1/5 (20%)
Ig strand C' 572..575 CDD:409456 0/2 (0%)
Ig strand D 581..584 CDD:409456 0/2 (0%)
Ig strand E 586..593 CDD:409456 0/6 (0%)
Ig strand F 599..608 CDD:409456 2/8 (25%)
Ig strand G 611..624 CDD:409456 1/12 (8%)

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