DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema1b and SEMA3B

DIOPT Version :10

Sequence 1:NP_611244.1 Gene:Sema1b / 37007 FlyBaseID:FBgn0016059 Length:770 Species:Drosophila melanogaster
Sequence 2:NP_001276990.1 Gene:SEMA3B / 7869 HGNCID:10724 Length:754 Species:Homo sapiens


Alignment Length:561 Identity:171/561 - (30%)
Similarity:271/561 - (48%) Gaps:56/561 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 RPSSAAMLVNAIPMILLITLSGLTIVAGWMPDVKPDLQTKQD-KVLAHFIGNSTDYFK--ILDHN 67
            |..:||:    ||.:.|:...||...|...|.::...|..|. ..|..|....|..::  ::|..
Human     3 RAGAAAV----IPGLALLWAVGLGSAAPSPPRLRLSFQELQAWHGLQTFSLERTCCYQALLVDEE 63

  Fly    68 DEFVLVGAKDVIYNVSLNGL-KEIARLEWHSTDADRELCALKGKH-EWDCHNYLRVYALRPNGEV 130
            ...:.|||::.:.:::|:.: |...:|.|.:....||.|...||. ..:|.|::::........:
Human    64 RGRLFVGAENHVASLNLDNISKRAKKLAWPAPVEWREECNWAGKDIGTECMNFVKLLHAYNRTHL 128

  Fly   131 LLCGTNSYKPRCRHYTPVEVSSEEAGSAGHAHAMRYEVSRDVEAQGLCPYSPAHNSTYAFADGHL 195
            |.|||.::.|.|        :..|.|.......:|.:..|..:.:|..||.|.|.:........|
Human   129 LACGTGAFHPTC--------AFVEVGHRAEEPVLRLDPGRIEDGKGKSPYDPRHRAASVLVGEEL 185

  Fly   196 YSATVADFSGGDPLIYRE-----NLRTEQYDLKQLNQPDFVGAI-------ERNGYVLFFFRELS 248
            ||...||..|.|..|:|.     :||||.:|.:.||:|.||...       ..:..:.|||||.:
Human   186 YSGVAADLMGRDFTIFRSLGQRPSLRTEPHDSRWLNEPKFVKVFWIPESENPDDDKIYFFFRETA 250

  Fly   249 MEVM-NFGKAVYSRVARVCKNDRGGPYSHGKSWTSFLKARLNCSVPG-EFPFYFDEIQAI--SPI 309
            :|.. ..|:...|||.::|:||.||..|....||:||||||.||||| |...:||:::..  ..:
Human   251 VEAAPALGRLSVSRVGQICRNDVGGQRSLVNKWTTFLKARLVCSVPGVEGDTHFDQLRPFPAEDV 315

  Fly   310 VESGSKS----LIYAVFTTSVNAIPGSAVCAFNVDDILAAFDGEFKSQKDSQSHWLPVEREQVPK 370
            ....|:.    |:||||:||.:...|||||.::::|:..||.|.|..::.....|:..: .:||.
Human   316 FLLSSRDHRTPLLYAVFSTSSSIFQGSAVCVYSMNDVRRAFLGPFAHKEGPMHQWVSYQ-GRVPY 379

  Fly   371 PRPGQCVEDSRTLTSIA---------VNFIKNHPLMEEAVPAVHGRPLLTKVNLHHRLTAIAVHP 426
            ||||.|  .|:|..:.:         :.|.:|||||..:|....||||..:|..::..|.||. .
Human   380 PRPGMC--PSKTFGTFSSTKDFPDDVIQFARNHPLMYNSVLPTGGRPLFLQVGANYTFTQIAA-D 441

  Fly   427 QVKSLSGAYYDVIYSGTDDGKVTKFINILSTHPNSTVDRLKTVVISEMQVLPLGTPIRELVISTS 491
            :|.:..| :|||::.|||.|.|.|.|::    |..:....:.:::.|:.|......:..:.||:.
Human   442 RVAAADG-HYDVLFIGTDVGTVLKVISV----PKGSRPSAEGLLLEELHVFEDSAAVTSMQISSK 501

  Fly   492 KNSLVVVSDGSLVSVPLHHC-SHIVDCLGCLSLQDPICAWD 531
            ::.|.|.|..::..:.||.| :|...|..|...:||.||||
Human   502 RHQLYVASRSAVAQIALHRCAAHGRVCTECCLARDPYCAWD 542

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema1bNP_611244.1 Sema_1A 55..511 CDD:200498 147/488 (30%)
PSI 510..>537 CDD:214655 10/23 (43%)
SEMA3BNP_001276990.1 Sema 46..521 CDD:472829 148/491 (30%)
PSI 520..>556 CDD:214655 10/23 (43%)
Ig 579..670 CDD:472250
Ig strand B 593..597 CDD:409353
Ig strand C 605..609 CDD:409353
Ig strand E 632..636 CDD:409353
Ig strand F 646..651 CDD:409353
Ig strand G 663..666 CDD:409353
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 707..754
Blue background indicates that the domain is not in the aligned region.

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