Sequence 1: | NP_001163178.1 | Gene: | Sema1b / 37007 | FlyBaseID: | FBgn0016059 | Length: | 770 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_002933132.1 | Gene: | sema3c / 613059 | XenbaseID: | XB-GENE-1014800 | Length: | 748 | Species: | Xenopus tropicalis |
Alignment Length: | 504 | Identity: | 153/504 - (30%) |
---|---|---|---|
Similarity: | 257/504 - (50%) | Gaps: | 52/504 - (10%) |
- Green bases have known domain annotations that are detailed below.
Fly 59 DY-FKILDHNDEFVLVGAKDVIYNVSLNGLK-EIARLEWHSTDADRELCALKGK---HEWDCHNY 118
Fly 119 LRVYALRPNGEVLLCGTNSYKPRCRHYTPVEVSSEEAGSAGHAHAMRYEVSRDVEAQGLCPYSPA 183
Fly 184 HNSTYAFADGHLYSATVADFSGGDPLIY-----RENLRTEQYDLKQLNQPDFV-------GAIER 236
Fly 237 NGYVLFFFRELSMEVMNFGKAVYSRVARVCKNDRGGPYSHGKSWTSFLKARLNCSVPGE--FPFY 299
Fly 300 FDEIQAISPIVESGS--KSLIYAVFTTSVNAIPGSAVCAFNVDDILAAFDGEFKSQKDSQSHWLP 362
Fly 363 VEREQVPKPRPGQC--------VEDSRTLTSIAVNFIKNHPLMEEAVPAVHGRPLLTKVNLHHRL 419
Fly 420 TAIAVHPQVKSLSGAYYDVIYSGTDDGKVTKFINILSTHPNSTVDRLKTVVISEMQVLPLGTPIR 484
Fly 485 ELVISTSKNSLVVVSDGSLVSVPLHHCSHI--VDCLGCLSLQDPICAWD 531 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Sema1b | NP_001163178.1 | Sema_1A | 55..511 | CDD:200498 | 142/480 (30%) |
PSI | 510..>537 | CDD:214655 | 11/24 (46%) | ||
sema3c | XP_002933132.1 | Sema_3C | 43..512 | CDD:200512 | 142/480 (30%) |
PSI | 511..548 | CDD:214655 | 11/24 (46%) | ||
Ig_Semaphorin_classIII | 573..662 | CDD:143279 | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
Panther | 1 | 1.100 | - | - | O | PTHR11036 |
Phylome | 0 | 0.000 | Not matched by this tool. | |||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
1 | 1.100 |