DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema1b and sema3c

DIOPT Version :9

Sequence 1:NP_001163178.1 Gene:Sema1b / 37007 FlyBaseID:FBgn0016059 Length:770 Species:Drosophila melanogaster
Sequence 2:XP_002933132.1 Gene:sema3c / 613059 XenbaseID:XB-GENE-1014800 Length:748 Species:Xenopus tropicalis


Alignment Length:504 Identity:153/504 - (30%)
Similarity:257/504 - (50%) Gaps:52/504 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    59 DY-FKILDHNDEFVLVGAKDVIYNVSLNGLK-EIARLEWHSTDADRELCALKGK---HEWDCHNY 118
            || ..::|.:.:.:.||:||.|.::::|.:. :...:.|.::.:..|.|.:.||   |  .|.|:
 Frog    51 DYRILLMDEDQDRIYVGSKDHILSLNINNISHDPLSVFWPASTSKVEECKMAGKDPTH--GCGNF 113

  Fly   119 LRVYALRPNGEVLLCGTNSYKPRCRHYTPVEVSSEEAGSAGHAHAMRYEVSRDVEAQGLCPYSPA 183
            :||........:.:||:.::.|.|.:.      :....|..|..|:.|   ::...:|.|.::|.
 Frog   114 VRVIQNFNRTHLYVCGSGAFSPVCTYI------NRGRRSEDHIFAIDY---KNESGKGRCSFNPK 169

  Fly   184 HNSTYAFADGHLYSATVADFSGGDPLIY-----RENLRTEQYDLKQLNQPDFV-------GAIER 236
            .|:.....:..|:|....||.|.|..|:     |..:||:|::.|.|::|.||       |....
 Frog   170 VNTVSVMINEELFSGMYIDFMGTDSAIFRSLTKRNAVRTDQHNSKWLSEPIFVDAQLLPDGTDPN 234

  Fly   237 NGYVLFFFRELSMEVMNFGKAVYSRVARVCKNDRGGPYSHGKSWTSFLKARLNCSVPGE--FPFY 299
            :..|.||.:|...:.....|.::|.:||||.||.||..|....||:||||||.|||..:  ...|
 Frog   235 DAKVYFFLKERLTDNSGSTKQIHSMIARVCPNDIGGQRSLVNKWTTFLKARLVCSVMDDDGTETY 299

  Fly   300 FDEIQAISPIVESGS--KSLIYAVFTTSVNAIPGSAVCAFNVDDILAAFDGEFKSQKDSQSHWLP 362
            |||::.:. ::|:.:  .:|:|.:||||.:...|||||.:::.||...|:|.| :.|:..:|.|.
 Frog   300 FDELEDVF-LMETDNPRTTLVYGIFTTSSSVFKGSAVCVYHMSDIQTVFNGPF-AHKEGPNHQLI 362

  Fly   363 VEREQVPKPRPGQC--------VEDSRTLTSIAVNFIKNHPLMEEAVPAVHGRPLLTKVNLHHRL 419
            ..:.::|.||||.|        ::.::......|.||:|||||..::.....||||.:....::.
 Frog   363 PYQGRIPYPRPGTCPGGAFTPNMKSTKEFPDDVVTFIRNHPLMFNSIYPTLKRPLLIRTGTDYKF 427

  Fly   420 TAIAVHPQVKSLSGAYYDVIYSGTDDGKVTKFINILSTHPNSTVDRLKTVVISEMQVLPLGTPIR 484
            |.|.| .:|.:..|.|: |::.|||.|.|.|.: ::..:.:::.:    :::.||:|.....||.
 Frog   428 TKIVV-DRVNAADGKYH-VLFLGTDKGTVQKVV-VVPANGSASGE----LILEEMEVFKSHAPIT 485

  Fly   485 ELVISTSKNSLVVVSDGSLVSVPLHHCSHI--VDCLGCLSLQDPICAWD 531
            .:.||:.|..|.|.|:..:..:.||.| ||  ..|..|...:||.||||
 Frog   486 SMKISSKKQQLYVSSEEGITQLSLHRC-HIYGTACADCCLARDPYCAWD 533

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema1bNP_001163178.1 Sema_1A 55..511 CDD:200498 142/480 (30%)
PSI 510..>537 CDD:214655 11/24 (46%)
sema3cXP_002933132.1 Sema_3C 43..512 CDD:200512 142/480 (30%)
PSI 511..548 CDD:214655 11/24 (46%)
Ig_Semaphorin_classIII 573..662 CDD:143279
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11036
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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