DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sema1b and SEMA3G

DIOPT Version :9

Sequence 1:NP_001163178.1 Gene:Sema1b / 37007 FlyBaseID:FBgn0016059 Length:770 Species:Drosophila melanogaster
Sequence 2:XP_024309410.1 Gene:SEMA3G / 56920 HGNCID:30400 Length:800 Species:Homo sapiens


Alignment Length:615 Identity:184/615 - (29%)
Similarity:271/615 - (44%) Gaps:115/615 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    64 LDHNDEFVLVGAKDVIYNVSLNGL----KEIARLEWHSTDADRELCALKGKHE-WDCHNYLRVYA 123
            ||...:.:.:|..|.:|::.|:..    :|:.   |......||.|..||:.. .:|.|::||  
Human    81 LDEYRDRLFLGGLDALYSLRLDQAWPDPREVL---WPPQPGQREECVRKGRDPLTECANFVRV-- 140

  Fly   124 LRPNG--EVLLCGTNSYKPRCRHYTPVEVSSEEAGSAGH--AHAMRYEVSRDVEAQGLCPYSPAH 184
            |:|:.  .:|.|||.:::|.|...|           .||  .|.:..|.......:|.||:.|:.
Human   141 LQPHNRTHLLACGTGAFQPTCALIT-----------VGHRGEHVLHLEPGSVESGRGRCPHEPSR 194

  Fly   185 NSTYAFADGHLYSATVADFSGGDPLIYREN-----LRTEQYDLKQLNQPDFVGAI-------ERN 237
            .....|.||.||:...|||.|.:.:|:|..     ||::. |...|:.|.||.|.       :.|
Human   195 PFASTFIDGELYTGLTADFLGREAMIFRSGGPRPALRSDS-DQSLLHDPRFVMAARIPENSDQDN 258

  Fly   238 GYVLFFFRELSMEVMNFGK--AVYSRVARVCKNDRGGPYSHGKSWTSFLKARLNCSVPGE--FPF 298
            ..|.|||.| ::...:.|.  ...|||.|||.||.||.......|::||||||.|||||.  ...
Human   259 DKVYFFFSE-TVPSPDGGSNHVTVSRVGRVCVNDAGGQRVLVNKWSTFLKARLVCSVPGPGGAET 322

  Fly   299 YFDEIQAISPIVESGSKSL-IYAVFTTSVNAIPGSAVCAFNVDDILAAFDGEFKSQKDSQSHWLP 362
            :||:::.:..:.....||| :||:|:|......|.|||.:::.||...|:|.|..:...|..|.|
Human   323 HFDQLEDVFLLWPKAGKSLEVYALFSTVSAVFQGFAVCVYHMADIWEVFNGPFAHRDGPQHQWGP 387

  Fly   363 VEREQVPKPRPGQC-----VEDSRTLTSI------AVNFIKNHPLMEEAVPAVHGRPLLTKVNLH 416
            . ..:||.||||.|     .:..|...|.      .:.|.:.||||...|...||||:|.|.:|.
Human   388 Y-GGKVPFPRPGVCPSKMTAQPGRPFGSTKDYPDEVLQFARAHPLMFWPVRPRHGRPVLVKTHLA 451

  Fly   417 HRLTAIAVHPQVKSLSGAYYDVIYSGTDDGKVTKFINIL---STHPNSTVDRLKTVVISEMQVLP 478
            .:|..|.| .:|::..|. ||||:.|||.|.|.|.|.:.   |..|       :.||:.|:||..
Human   452 QQLHQIVV-DRVEAEDGT-YDVIFLGTDSGSVLKVIALQAGGSAEP-------EEVVLEELQVFK 507

  Fly   479 LGTPIRELVISTSKNSLVVVSDGSLVSVPLHHC-SHIVDCLGCLSLQDPICAWD----------- 531
            :.|||.|:.||..:..|.|.|...:..:.||.| ::...|..|...:||.||||           
Human   508 VPTPITEMEISVKRQMLYVGSRLGVAQLRLHQCETYGTACAECCLARDPYCAWDGASCTHYRPSL 572

  Fly   532 ----------------------LQTHECKNLATSQHKFGTK---TYLQSLNSTKKAAALLCPHIP 571
                                  .|..|...|..:...:||:   |:|:.|..:.:||.......|
Human   573 GKRRFRRQDIRHGNPALQCLGQSQEEEAVGLVAATMVYGTEHNSTFLECLPKSPQAAVRWLLQRP 637

  Fly   572 RDAPGAETVSFVTMAPPPTEEQKLLYSNVG 601
            .| .|.:.|.         .::::|::..|
Human   638 GD-EGPDQVK---------TDERVLHTERG 657

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema1bNP_001163178.1 Sema_1A 55..511 CDD:200498 159/486 (33%)
PSI 510..>537 CDD:214655 10/60 (17%)
SEMA3GXP_024309410.1 Sema_3G 67..540 CDD:200516 159/486 (33%)
PSI 539..585 CDD:214655 9/45 (20%)
Ig_Semaphorin_classIII 604..694 CDD:143279 13/64 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3611
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11036
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
43.910

Return to query results.
Submit another query.