DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema1b and sema3e

DIOPT Version :10

Sequence 1:NP_611244.1 Gene:Sema1b / 37007 FlyBaseID:FBgn0016059 Length:770 Species:Drosophila melanogaster
Sequence 2:NP_001038549.1 Gene:sema3e / 565658 ZFINID:ZDB-GENE-030131-7864 Length:768 Species:Danio rerio


Alignment Length:507 Identity:169/507 - (33%)
Similarity:261/507 - (51%) Gaps:50/507 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    55 GNSTDYFKILDHNDEFVLVGAKDVIYNVSLNGL-KEIARLEWHSTDADRELCALKGKHEWDCHNY 118
            |....|..:||...|.:::|.|||:|:::|..: ....|:.|.|:....|.|.::|:.:.:|.||
Zfish    51 GRLQQYTMLLDETQERLIIGGKDVLYSLNLERITAPHKRIVWSSSQEQVEDCLMQGREKPECANY 115

  Fly   119 LRVYALRPNGEVLLCGTNSYKPRCRHYTPVEVSSEEAGSAGHAHAMRYEVSRDVEAQGLCPY--- 180
            :::.....:..:|.|||.::.|.|.:   :.||.    .|......|.|.......:|..|:   
Zfish   116 IKLVQHYNSTHLLACGTGAFSPVCAY---IRVSR----GAEQEREFRLESDHIESGRGRVPFHPN 173

  Fly   181 SPAHNSTYAFADGHLYSATVADFSGGDPLIYR----ENLRTEQYDLKQLNQPDFVGAI------- 234
            ||..::.|.   |.|:.....|:...|..:||    ..:|||..|.:|||:|.|||:.       
Zfish   174 SPLASTVYR---GELFVGLYTDYWENDAALYRLGNHSFIRTEVGDRQQLNEPKFVGSAVIPDNDD 235

  Fly   235 ERNGYVLFFFRELSMEVMNFGKAVYSRVARVCKNDRGGPYSHGKSWTSFLKARLNCSV--PGEFP 297
            ..:..|.:||.|...:|....||||:||||||.||:||.......|:||||.||.|||  |....
Zfish   236 PADDKVYYFFTERVADVEGGNKAVYTRVARVCANDQGGQRMLVNRWSSFLKTRLICSVAGPNGID 300

  Fly   298 FYFDEIQAISPIVESGSKS-LIYAVFTTSVNAIPGSAVCAFNVDDILAAFDGEFKSQKDSQSHWL 361
            .:|||::.:..:.:...|: .|:.:|:|:.....|.|||.:|:|||.|||:|.|..::.:..|| 
Zfish   301 THFDELEDVFVLRKKDEKNPEIFGLFSTTSAVFKGYAVCMYNMDDIRAAFNGPFAHRERTDHHW- 364

  Fly   362 PVEREQVPKPRPGQCV--------EDSRTLTSIAVNFIKNHPLMEEAVPAVHGRPLLTKVNLHHR 418
            .|...:||.||||.|.        ..|:..:...:.|.::||||.:||..||.||:|.......:
Zfish   365 KVYDGKVPYPRPGSCASKINGGHFSSSKEYSDEVLRFARSHPLMFQAVQPVHRRPILLDTEGGRK 429

  Fly   419 LTAIAVHPQVKSLSGAYYDVIYSGTDDGKVTKFINILSTHPNSTVDRLKTVVISEMQVLPLGTPI 483
            ||.:|| .:|::..| :|:|::.|||:..|.|.|.|.    |...|.::.|::.|:||..:..||
Zfish   430 LTQLAV-DRVEAEDG-HYNVLFIGTDNSVVLKMITIY----NKEADTVEEVLLEELQVFKVPVPI 488

  Fly   484 RELVISTSKNSLVVVSDGSLVSVPLHHC----SHIVDCLGCLSLQDPICAWD 531
            .|::|||.:..|.|.|:..:..:.:|.|    |...||  ||: :||.||||
Zfish   489 TEILISTKRQQLYVGSELGVTQIRVHQCGLYGSACADC--CLA-RDPYCAWD 537

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema1bNP_611244.1 Sema_1A 55..511 CDD:200498 157/481 (33%)
PSI 510..>537 CDD:214655 12/26 (46%)
sema3eNP_001038549.1 Sema_3E 46..516 CDD:200514 157/481 (33%)
PSI 515..563 CDD:214655 12/26 (46%)
Ig_Sema3 579..668 CDD:409455
Ig strand A 579..585 CDD:409455
Ig strand B 590..598 CDD:409455
Ig strand C 604..610 CDD:409455
Ig strand C' 612..615 CDD:409455
Ig strand D 623..627 CDD:409455
Ig strand E 630..637 CDD:409455
Ig strand F 643..652 CDD:409455
Ig strand G 655..668 CDD:409455
Blue background indicates that the domain is not in the aligned region.

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