DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema1b and si:ch211-129c21.1

DIOPT Version :9

Sequence 1:NP_001163178.1 Gene:Sema1b / 37007 FlyBaseID:FBgn0016059 Length:770 Species:Drosophila melanogaster
Sequence 2:XP_005170527.1 Gene:si:ch211-129c21.1 / 563087 ZFINID:ZDB-GENE-030131-5796 Length:791 Species:Danio rerio


Alignment Length:798 Identity:209/798 - (26%)
Similarity:347/798 - (43%) Gaps:156/798 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 SGLTIVAGWMPDVKPDLQTKQDKVLAHFIGNSTDYFKILDHNDEFVLV-GAKDVIYNVSLNGLK- 88
            |.|.|:|      :..:|.:.:..:........:|..:|...|..:|| ||::.::.:.:|.:. 
Zfish    22 SSLDIIA------RKTIQYEDNHAITFKEQGIWNYSTMLIREDLGLLVLGAREAVFALDINDISV 80

  Fly    89 EIARLEWHSTDADRELCALKGKH-EWDCHNYLRVYALRPNGEVLLCGTNSYKPRCRHYTPVEVSS 152
            ..:::.|..|:..::.|..|||| :.|||||:|:.....:..:.:||||::.|.|.:.|      
Zfish    81 SRSKVLWKVTEEKQKECTSKGKHPDIDCHNYIRMLHQMNDSVMYICGTNAFSPTCDYIT------ 139

  Fly   153 EEAGSAGHAHAMRYEVSRDVEAQGLCPYSPAHNSTYAFADGHLYSATVADFSGGDPLIYRENLRT 217
                   :.:.......:..:.:|.||:.|...|:....|..|||||..:|.|.:|:|.|.:..|
Zfish   140 -------YDNGQLQLEGKQEDGRGKCPFDPFQRSSSVMVDQDLYSATSLNFLGSEPVILRTSPIT 197

  Fly   218 EQYDLKQ--LNQPDFV--GAIER--------NGYVLFFFRELSMEVMNFGKAVYSRVARVCKNDR 270
            .:..||.  ||:|:|:  .|:..        :..:..||.|.::|...:.|.|.||||||||.|.
Zfish   198 LRTLLKSSWLNEPNFIYMDAVPESEDSPEGDDDKIYMFFSENAIEYDFYNKLVVSRVARVCKGDM 262

  Fly   271 GGPYSHGKSWTSFLKARLNCSVP-GEFPFYFDEIQAISPIVESGSKSLIYAVFTT-SVNAIPGSA 333
            ||..:..:.|||||||||:|||| ...|:...::..:..  :...||:.||:||: |.:....||
Zfish   263 GGLRTLQRKWTSFLKARLDCSVPEPSLPYVIQDVFHVRH--QKWRKSVFYAIFTSQSSSTDQSSA 325

  Fly   334 VCAFNVDDILAAFD-GEFKSQ---KDSQSHWLPVEREQVPKPRPGQCVEDSRTLTSI-------- 386
            |||:||.||...|. |:||::   :.|...|:....: :|.||||.|:.::...:.|        
Zfish   326 VCAYNVTDISNVFSRGKFKTEVAVEMSDVKWVTYSGD-LPVPRPGDCINNAARTSGIKSSMNIPD 389

  Fly   387 -AVNFIKNHPLMEEAVPAVHGRPLLTKVNLHHRLTAIAVHPQVKSLSGAYYDVIYSGTDDGKVTK 450
             .:.||::.|||::||..:.|:|||.|..  ..||.:.| ..|.:..|..|.:::.||.:|.|.|
Zfish   390 KTLQFIRDRPLMDDAVHPITGKPLLLKRG--PLLTRLVV-DMVTAADGQSYPMMFVGTANGYVQK 451

  Fly   451 FINILSTHPNSTVDRLKTVVISEMQVLPLGTPIRELVISTSKNSLVVVSDGSLVSVPLHHCSHIV 515
            .:|...          :..:|.|:::......|.  |:...:|.|...|...:|.:|:.:||...
Zfish   452 AVNYDG----------EMHIIEEVKLFESEEAID--VLRLHQNQLYAGSASGVVQMPVSNCSRYS 504

  Fly   516 DCLGCLSLQDPICAWDLQTHECKNL-ATSQHKFGTKTYLQSLNSTKKAAALLCPHIPRDAPGAET 579
            .||.|:..:||.||||:....|... |:::|   .|:.|  :.|.|...|..||......|...|
Zfish   505 SCLDCVLARDPYCAWDVPAQRCSRFPASTEH---AKSNL--IQSLKDGDATQCPITAPIEPKVRT 564

  Fly   580 VSF--------------------VTMAPPPTEEQK-------LLYSNVGSSQ-GNQPSLEQQPTG 616
            :..                    :...|.|...:|       :|.||..|:. |....:..:...
Zfish   565 LVLGNNIRLLCRPDSNLAQVNWNLAGKPLPFSNRKYTIYNDAILISNASSADAGRYTCVSVEQAK 629

  Fly   617 GDDFGLNKITLTSMD---------PDDIMPNLNDPQK-STASVDEIKYASTPSF----------- 660
            |..:   ..||...|         .|.|...|..|.: .|.|...||....|||           
Zfish   630 GKHY---TKTLAIYDLHEEVAVVVTDKIKTTLGIPNEIYTTSSGLIKPEEPPSFSKNQASDSKWI 691

  Fly   661 ----------MLLTTIVFFTFLVGGIAG-ICCVKAKSRLMEAQMDESHRNHFGKPMQFKHQNTGK 714
                      :::..::.:...:|.|:. :||.:        |..:||    |...:.::::.|.
Zfish   692 AMQVALAMLSIMMACLLIWNLYMGHISPFMCCGR--------QPIKSH----GNLPRMEYKSAGN 744

  Fly   715 D--------INLLMGSNA 724
            |        :||.:.:|:
Zfish   745 DVMDSKPQMVNLCVTTNS 762

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema1bNP_001163178.1 Sema_1A 55..511 CDD:200498 145/485 (30%)
PSI 510..>537 CDD:214655 11/26 (42%)
si:ch211-129c21.1XP_005170527.1 Sema_4E 42..498 CDD:200521 145/486 (30%)
PSI 499..553 CDD:214655 19/58 (33%)
Ig_Sema4D_like 558..644 CDD:143281 14/88 (16%)
IG_like 560..623 CDD:214653 10/62 (16%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11036
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
22.010

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