DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema1b and sema4bb

DIOPT Version :9

Sequence 1:NP_001163178.1 Gene:Sema1b / 37007 FlyBaseID:FBgn0016059 Length:770 Species:Drosophila melanogaster
Sequence 2:XP_005168979.2 Gene:sema4bb / 561146 ZFINID:ZDB-GENE-120503-1 Length:849 Species:Danio rerio


Alignment Length:849 Identity:223/849 - (26%)
Similarity:362/849 - (42%) Gaps:172/849 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 IVAGWMPDVKPDLQTKQDKVLAHFI------GNSTDYFKI----------LDHNDEFVLVGAKDV 78
            ::||    |.......:|.|.|...      |.|...|.:          |..::..:.|||::.
Zfish    29 VLAG----VLQSTMASEDDVTARISFTYNAEGRSVSGFSVNGVYNYSALLLSPDENKIYVGAREN 89

  Fly    79 IYNVSLNGLKEIARLE----WHSTDADRELCALKGKH-EWDCHNYLRVYALRPNGEVLLCGTNSY 138
            |:::||:.: .:..|:    |.:.:..|..|..|||. :.||.||:::.....:..:.:|||.::
Zfish    90 IFSLSLDNI-SVTHLQKTLTWSTPETKRGECIFKGKDPQTDCFNYIKILLRLNSTHLFVCGTYAF 153

  Fly   139 KPRCRHYTPVEVSSEEAGSAGHAHAMRYEVSRDVEAQGLCPYSPAHNSTYAFADGHLYSATVADF 203
            .|.|. |..:...|.||...|.      .:..|  .:|.||::|.:.||....||.||:|||::|
Zfish   154 SPICT-YINISSFSLEADEKGE------PIMED--GRGRCPFNPEYRSTAITVDGELYTATVSNF 209

  Fly   204 SGGDPLIYRE-----NLRTEQYDLKQLNQPDFVGAI-------ERN-GYVLFFFRELSMEVMNFG 255
            .|.:|.|||.     .|:||. .|..|..|.|||:.       ||| ..:.|||.|...|...|.
Zfish   210 QGNEPSIYRSLGSGTPLKTEN-SLNWLQDPAFVGSAHITGSDSERNDDQIYFFFSETGKEFDFFD 273

  Fly   256 KAVYSRVARVCKNDRGGPYSHGKSWTSFLKARLNCSVPGE-FPFYFDEIQAISPIVESGSKSLIY 319
            ..:.||:|||||.|:||.....|.||:||||:|.||:|.: |||...:...:.| .:....:|:|
Zfish   274 NTIVSRIARVCKEDQGGERVLQKKWTTFLKAQLLCSLPDDGFPFNIIQDVYVLP-AKRKKNTLLY 337

  Fly   320 AVFTT--SVNAIPGSAVCAFNVDDILAAFDGEFKSQKDSQSHWLPVEREQVPKPRPGQC------ 376
            |||.:  |......||||.|::|.:..||.|.:|........|. ...:.||:||||.|      
Zfish   338 AVFASQWSKGLAGSSAVCVFSMDQVDQAFTGRYKEVNRETQQWY-TYTQSVPEPRPGMCITNASR 401

  Fly   377 ---VEDSRTLTSIAVNFIKNHPLMEEAVPAVHGRPLLTKVNLHHRLTAIAVHPQVKSLSGAYYDV 438
               ::.|..:....:||:|:|.||:.   .|..:|:|....:|:  |.|||| .||.|..| |||
Zfish   402 QLGIDSSLDMPDKVLNFVKDHFLMDR---PVRSQPVLFTHTVHY--TQIAVH-HVKGLHRA-YDV 459

  Fly   439 IYSGTDDGKVTKFINILS-THPNSTVDRLKTVVISEMQVLPLGTPIRELVISTSKNSLVVVSDGS 502
            ::.||.||::.|.:|:.. .|           :|.|:|:.....|::::.:.::|..|.|.|...
Zfish   460 MFIGTADGRLQKAVNVAGMMH-----------IIEEIQLFSEQQPVQQIELDSAKGLLFVSSHSG 513

  Fly   503 LVSVPLHHCSHIVDCLGCLSLQDPICAWDLQTHECKNLATSQHKFGTKTYLQSLNSTKKAAALL- 566
            :|.:|:.:||...:|..|:..:||.||| ..|| |.::.....:...:..::..:::|..:.:| 
Zfish   514 IVQLPVANCSFHNNCGECVLARDPYCAW-TGTH-CTDVTLVPPQNQWQQDIEEADTSKCNSTMLR 576

  Fly   567 ----CPHIPRDAPGAETVSFVTMAPPPTEEQKLLYSNVGSSQGN-----QPSLEQQPTGGDDFGL 622
                ....||....:|| |...:...|....:||..|:.|:..:     :|::........|.||
Zfish   577 VDSGSSVSPRSFTNSET-SDCELIIIPANTLQLLPCNLRSNHAHRKWLYKPNVSHFLFPSADGGL 640

  Fly   623 NKITLTSMDPDDIMPNLN----------------DPQKSTASVDEIKYASTPSFMLLTTIVFFTF 671
              :.......|::....:                :|...|.:  :|.....|            |
Zfish   641 --VVSGRAGSDEVFSCWSEERGFWQLLANYCVKAEPLSETTT--KIGRKEAP------------F 689

  Fly   672 LVGGIAGICCVKAKSRLMEAQMDESHRNH----------------------FGKPMQFKHQNTGK 714
            |:..||        |.::..:.:.....|                      ||..:.::|:...|
Zfish   690 LIQSIA--------SDILSEESEAHSAQHRIKTYGTELAVVCVLLAVCVLSFGLSVVYRHRGRMK 746

  Fly   715 DINLLMGSNAYTTTQKT---PNLDLEKDRSHECKNSTEH-----LEKE-----LPCKTSTLTKVK 766
            ::  |.|.......||:   |...|..:......:.:||     ||:.     .|.:|:|..|.:
Zfish   747 EV--LRGGEQAGGAQKSTVHPGESLPLNAGAPPTSPSEHKSYQTLEENCSYIIAPAETNTPQKSE 809

  Fly   767 RTYI 770
            .|.|
Zfish   810 ETQI 813

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema1bNP_001163178.1 Sema_1A 55..511 CDD:200498 158/496 (32%)
PSI 510..>537 CDD:214655 11/26 (42%)
sema4bbXP_005168979.2 Sema_4B 61..520 CDD:200518 156/489 (32%)
PSI 521..570 CDD:307546 12/50 (24%)
Ig 596..670 CDD:325142 10/75 (13%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3611
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11036
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.910

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