DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema1b and si:dkey-49n23.1

DIOPT Version :10

Sequence 1:NP_611244.1 Gene:Sema1b / 37007 FlyBaseID:FBgn0016059 Length:770 Species:Drosophila melanogaster
Sequence 2:XP_687092.1 Gene:si:dkey-49n23.1 / 558742 ZFINID:ZDB-GENE-050208-762 Length:758 Species:Danio rerio


Alignment Length:545 Identity:174/545 - (31%)
Similarity:275/545 - (50%) Gaps:66/545 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 DLQTKQDKVLAHFIGNSTDY-FKILDHNDEFVLVGAKDVIYNVSLNGLKEIAR-LEWHSTDADRE 103
            :|:::.|..:....|....| ..:||.:..::|||.:|.||.::.:.|.:.:| :.|.:.....|
Zfish    38 ELRSRNDSAVFWDGGEGGAYQALLLDEDRGWLLVGGRDHIYMLNSDSLTQPSRKIHWPAGQEHIE 102

  Fly   104 LCALKGKH-EWDCHNYLRVYALRP--NGEVLLCGTNSYKPRCRHY-------TPVEVSSEEAGSA 158
            .|...||: ..||.||:|:  |:|  ...|.:|||.::.|:|.:.       .|........|.:
Zfish   103 RCKYAGKNLSMDCANYVRL--LQPFNKTHVYVCGTGAFHPQCTYIDLGHNLEKPTFQLLSHVGES 165

  Fly   159 GHAHAMRYEVSRDVEAQGLCPYSPAHNSTYAFADGHLYSATVADFSGGDPLIYREN--------L 215
            |               :|.||:||....|....||.||:.|..||.|.:..|:|.:        :
Zfish   166 G---------------RGKCPFSPQEPFTARLTDGELYAGTAVDFMGTNAAIFRTSVHSNNQHYI 215

  Fly   216 RTEQYDLKQLNQPDFVGAIE-------RNGYVLFFFRELSMEVMNFGKAVYSRVARVCKNDRGGP 273
            |||.|....||:|:|||:..       .:..|.|||:|.::|.....|.:|||||||||||.||.
Zfish   216 RTEAYQDHWLNEPEFVGSYSIPDTHSLDDDKVYFFFKETAVESNQLDKRIYSRVARVCKNDIGGK 280

  Fly   274 YSHGKSWTSFLKARLNCSVPGE--FPFYFDEIQAISPI-VESGSKSLIYAVFTTSVNAIPGSAVC 335
            .|....|::||||||.|:|||.  ...:|||::.|..: .:.....:||.||:||.:...|||||
Zfish   281 RSLINRWSTFLKARLVCTVPGPGGMDTHFDELEDIFLLETKDPQNPVIYGVFSTSSSVFRGSAVC 345

  Fly   336 AFNVDDILAAFDGEFKSQKDSQSHWLPVEREQVPKPRPGQC--------VEDSRTLTSIAVNFIK 392
            .:::..|.|||:|.|..::.....|:.. :.::|.||||.|        .:.:|......|:|::
Zfish   346 VYSMASIRAAFNGPFAHKESPDYRWMEY-KGKIPYPRPGTCPSETYDALYKSTRDFPDDVVSFMR 409

  Fly   393 NHPLMEEAVPAVHGRPLLTKVNLHHRLTAIAVHPQVKSLSGAYYDVIYSGTDDGKVTKFINILST 457
            .|.||.|.|..:|.||:.|::|..:||..:.| .:|.:..| .|||::.|||||:|.|.:::   
Zfish   410 AHQLMWEPVVPIHRRPVFTRINTPYRLKKLVV-DRVDAEDG-QYDVLHLGTDDGRVLKVVSV--- 469

  Fly   458 HPNSTVDRLKTVVISEMQVLPLGTPIRELVISTSKNSLVVVSDGSLVSVPLHHCS-HIVDCLGCL 521
             |....: ::.:::.|:.|....|||..:.:||.:..|.:.||.::|.:|:..|. :...|:.|.
Zfish   470 -PKENWE-IEEIILEELNVFKTQTPILSMELSTKRQVLFISSDENVVQLPVQRCELYGKACVDCC 532

  Fly   522 SLQDPICAWDLQTHECKNLATSQHK 546
            ..:||.||||  ...|.|...|..:
Zfish   533 LARDPYCAWD--GSSCTNYFPSNKR 555

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema1bNP_611244.1 Sema_1A 55..511 CDD:200498 160/493 (32%)
PSI 510..>537 CDD:214655 9/27 (33%)
si:dkey-49n23.1XP_687092.1 Sema_3 48..521 CDD:200500 160/497 (32%)
PSI 520..557 CDD:214655 12/38 (32%)
Ig_Sema3 580..672 CDD:409455
Ig strand A 580..586 CDD:409455
Ig strand B 591..599 CDD:409455
Ig strand C 605..611 CDD:409455
Ig strand C' 613..616 CDD:409455
Ig strand D 627..631 CDD:409455
Ig strand E 634..641 CDD:409455
Ig strand F 647..656 CDD:409455
Ig strand G 659..672 CDD:409455
Blue background indicates that the domain is not in the aligned region.

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