DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema1b and sema6e

DIOPT Version :9

Sequence 1:NP_001163178.1 Gene:Sema1b / 37007 FlyBaseID:FBgn0016059 Length:770 Species:Drosophila melanogaster
Sequence 2:NP_001186294.1 Gene:sema6e / 556743 ZFINID:ZDB-GENE-040724-119 Length:1064 Species:Danio rerio


Alignment Length:868 Identity:257/868 - (29%)
Similarity:398/868 - (45%) Gaps:195/868 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 SRPSSAAMLVNAIPMILLITLSGLT-IVAGWMP---DVKP--DLQTKQDKVLAHFIGNSTDY--- 60
            |||        .:.:.|::||:.|. :..|..|   |::|  .:.::...:...|.||.:|.   
Zfish     8 SRP--------LLALTLMLTLTCLKHLCHGATPFPQDLEPIRTVGSEHTYLYPSFQGNMSDNDTA 64

  Fly    61 -----FKILDHNDEFVLVGAKDVIYNVSLN-GLKEIA---RLEWHSTDADRELCALKGKHEWDCH 116
                 |:.:...:..|.:.|:|.::.::|: .|:.|.   :|.|.:.|.::  |.::||:..:|:
Zfish    65 RLGLDFQRMLRINHMVYIAARDHVFAINLSASLERIVPQQKLTWKTKDVEK--CTVRGKNSDECY 127

  Fly   117 NYLRVYALRPNGEVLLCGTNSYKPRCRHYTPVEVSSEEAGSAGHAHAMRYEVSRDVEAQGLCPYS 181
            ||::|...|.:..:..||||::.|.||:|   ::||.|            :...:|..|..||:.
Zfish   128 NYIKVLVPRNDETLFACGTNAFNPTCRNY---KMSSLE------------QDGEEVIGQARCPFE 177

  Fly   182 PAHNSTYAFADGHLYSATVADFSGGDPLIYRE------NLRTEQYDLKQLNQPDFVGAIERNGYV 240
            ...::...||.|..||||:.||...|.:|||.      .|||.:||.|.|.:|.|:.|||...||
Zfish   178 SRQSNVGLFAGGDFYSATMTDFLASDAVIYRSLGESSPVLRTVKYDSKWLREPHFLHAIEYGNYV 242

  Fly   241 LFFFRELSMEVMNFGKAVYSRVARVCKNDRGG-PYSHGKSWTSFLKARLNCSVPGEFPFYFDEIQ 304
            .||..|:::|....||.|:||||||||||.|| |....:.|||||||||||||||:..||||.:|
Zfish   243 YFFLSEIAVEYTTLGKVVFSRVARVCKNDNGGSPRVLERYWTSFLKARLNCSVPGDSFFYFDVLQ 307

  Fly   305 AISPIVESGSKSLIYAVFTTSVNAIPGSAVCAFNVDDILAAFDGEFKSQKDSQSHWLPVEREQVP 369
            :::.:::...:..:..||||..|:|.|||||||.:|||...|:|:||.|::|:|.|.||..|.||
Zfish   308 SLTNVMQINHRPAVLGVFTTQANSITGSAVCAFYMDDIEKVFNGKFKEQRNSESAWTPVPDEAVP 372

  Fly   370 KPRPGQCVED--------SRTLTSIAVNFIKNHPLMEEAVPAVHGRPLLTKVNLHHRLTAIAVHP 426
            |||||.|..|        |.......:.|||::|||:||||:|:.||..|:.....:||.||   
Zfish   373 KPRPGSCAGDGPAAGYKSSTNFPDETLTFIKSYPLMDEAVPSVNNRPCFTRTTSRFKLTQIA--- 434

  Fly   427 QVKSLSGAY--YDVIYSGTDDGKVTKFINILSTHPNSTVDRLKTVVISEMQVL-PLGTPIR---- 484
             |.:.:|.|  |.|::.|:::|.|.|.  :.|.||||:   ..|.|:.::.|. |....:|    
Zfish   435 -VDTAAGPYKNYTVVFLGSENGHVLKV--LASMHPNSS---YSTQVLEDIDVYNPNKCNVRGEDR 493

  Fly   485 ---ELVISTSKNSLVVVSDGSLVSVPLHHCSHIVDC-LGCLSLQDPICAWDLQTHECKNLATSQH 545
               .|.:....::|.|...|.::.|||..||....| ..|||.:||.|.| |....|..:|.. .
Zfish   494 RILGLELDKDHHALFVAFTGCVIRVPLSRCSDYGICRKSCLSSRDPYCIW-LSAGNCATVAPG-F 556

  Fly   546 KFGTKTYLQS------------LNSTKKAAALLCPHIPRDAP-GAETVSFVTMAPPPT----EEQ 593
            |.|.:.|::|            |.:|:|....:.....:.:| .|.|.:......|.|    ||.
Zfish   557 KSGFEQYVESGYPQYPDSCHDVLATTRKQNPAVDSAYGKTSPTSASTTNQGPAGAPETGTHPEEG 621

  Fly   594 KLLYSNVGSSQGNQPSLEQQPTGGDDFGLNKITLTSMDPDDIMPNLNDPQKSTASVDEIKYASTP 658
            :         :|.|.|.:.:|...:..|:.:       |.::       .||..||         
Zfish   622 R---------RGGQGSPDLEPGSVEMEGVRR-------PPEV-------DKSNHSV--------- 654

  Fly   659 SFMLLTTIVFFTFLVGG-IAG--ICCV------KAK----------------------SRLMEAQ 692
            .:.||...|...|::|. ::|  :.|.      |.|                      :.|:|:|
Zfish   655 HYTLLIACVLVAFVLGAFLSGFLVSCYCNHNVNKTKRLSKDPEAPIPHALSLRSLAKLNGLLESQ 719

  Fly   693 ---------------------MDESHRN--HFGKPMQFKHQNTGKDINLLMGSNAYTTTQKTPNL 734
                                 .:::||.  |.....:..|.:......|    :...|...||.|
Zfish   720 NKDEKLEVSSPKLYNSFFANGKEQAHRRNAHHAAMTELIHPHHHHSAEL----SGLPTPDSTPEL 780

  Fly   735 DLEK--------DRSHECKNSTE 749
            .::.        :::..|.|:.|
Zfish   781 PIKSMKAFKNQWEKNQNCNNAKE 803

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema1bNP_001163178.1 Sema_1A 55..511 CDD:200498 184/492 (37%)
PSI 510..>537 CDD:214655 11/27 (41%)
sema6eNP_001186294.1 Sema_6 60..521 CDD:200503 181/486 (37%)
PSI 522..>548 CDD:307546 11/26 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 318 1.000 Domainoid score I1228
eggNOG 1 0.900 - - E1_KOG3611
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 349 1.000 Inparanoid score I2257
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000892
OrthoInspector 1 1.000 - - mtm6502
orthoMCL 1 0.900 - - OOG6_101616
Panther 1 1.100 - - O PTHR11036
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X415
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
109.820

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