DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema1b and sema4f

DIOPT Version :9

Sequence 1:NP_001163178.1 Gene:Sema1b / 37007 FlyBaseID:FBgn0016059 Length:770 Species:Drosophila melanogaster
Sequence 2:XP_005166611.1 Gene:sema4f / 556003 ZFINID:ZDB-GENE-130530-860 Length:797 Species:Danio rerio


Alignment Length:677 Identity:174/677 - (25%)
Similarity:289/677 - (42%) Gaps:137/677 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 VNAIPMILLITLSGLTIVAGWMPDVK------PDLQTKQDKVLAHFIGNSTDYFKILDHNDEFVL 72
            :|::..:.::::...:.::.|...|.      |.|..         .||.:.:   |.|::..:|
Zfish     1 MNSVTGLFVLSVLLCSTLSSWSATVNSNGAEFPRLSG---------FGNLSTF---LLHSESGML 53

  Fly    73 -VGAKDVIYNVSLNGLKEIARLEWHSTDADRELCALKGKHEWDCHNYLRVYALRPNGEVLLCGTN 136
             :||:|.:..|....|.: ..:||...:..|:.|..|||.|.||.||:|:.....:|.:..|||.
Zfish    54 YLGARDAVIVVDTAKLSK-KMIEWSVPEDRRKSCVAKGKTEDDCRNYVRLLEFLDDGRIYACGTF 117

  Fly   137 SYKPRCRHYTPVEVSSEEAGSAGHAHAMRYEVSRDVEAQGLCPYSPAHNSTYAFADGHLYSATVA 201
            ::.|:|. :..:...|.|....|.   ::.|..:     |.||:.|:...|...|.|.||:|..:
Zfish   118 AFDPQCA-FINISTFSLEKQDDGF---IKMETGK-----GKCPFEPSQPYTAVMAGGILYTAVTS 173

  Fly   202 DFSG---------GDPLIYRENLRTEQYDLKQLNQPDFVGA--IERNG---------YVLFFFRE 246
            :|.|         |   |.:|.:|||| .:..|:.|:|:.:  |:.:.         .:.|||.|
Zfish   174 NFLGTMYDISRATG---IEQERIRTEQ-SINWLSDPEFISSAFIQEDAKNNPTGEDDKIYFFFTE 234

  Fly   247 LSMEVMNFGKAVYSRVARVCKNDRGGPYSHGKSWTSFLKARLNCS--VPGEFPFYFDEIQAISPI 309
            ::.|...:.|....|||||||:|.||..:..:.||:||||:|.|.  ..|:......::..:...
Zfish   235 VAKEYDLYTKVKVPRVARVCKSDVGGMKTLQRRWTTFLKAQLVCEDRASGQRFNILTDVFTVQHQ 299

  Fly   310 VESGSKSLIYAVFTTSVNAIPGSAVCAFNVDDILAAFDGEFKSQKDSQSHWLPVEREQVPKPRPG 374
            ....|.:..|.:||:.......||||.:::::|....:|.||..|.|..:|  :..|.:|.||||
Zfish   300 PGDPSSTHFYGIFTSQWEREELSAVCVYSLEEITKVMNGPFKELKKSCENW--INPEPIPTPRPG 362

  Fly   375 QCV---------EDSRTLTSIAVNFIKNHPLMEEAVPAVHGRPLLTKVNLHHRLTAIAVHPQVKS 430
            ||:         |.|..|....:.|:::|||||.:|.||   ||:.:..:.:...|:.:.|....
Zfish   363 QCLNSDQRELGFESSLKLPDKVLTFMRDHPLMENSVVAV---PLMIRYGITYTKLAVTLTPAFSG 424

  Fly   431 LSGAYYDVIYSGTDDGKVTKFINILSTHPNSTVDRLKTVVISEMQVLPLGTPIRELVISTSKNSL 495
            .......|::.|||.|::.|   :....||:|       :|.|:.:.....|:..:::  .|...
Zfish   425 QKQHITTVLHLGTDHGELHK---VAVVGPNAT-------LIEEITLFSAQEPVNNILL--YKGEA 477

  Fly   496 VVVSDGSLVSVPLHHCSHIVDC--------LGCLSLQD-PICAW----------DL--QTHECKN 539
            ||.|..|||.:|:..||....|        |||:...: |.||.          ||  |.::.:.
Zfish   478 VVGSPHSLVKLPILGCSLYSSCEVCARAGGLGCIWRHNRPACAMAKPGEVVEAEDLVRQCNKREG 542

  Fly   540 LATS---------------------------QHKFGTKT----YLQSLNSTKKAAAL---LCPHI 570
            |.:.                           .|..|:.|    |...:..|.|:..:   ||...
Zfish   543 LCSPPVIEMRVVEGLRVLLSCVQLSPRPCHWDHPPGSHTRHHNYDLEVQITNKSLGIYVCLCDEA 607

  Fly   571 PRDAPGA-ETVSFVTMAPPPTEEQKLL 596
            .||.|.. :.|..:|:..|..|..|.:
Zfish   608 GRDQPPCRKAVYQLTLDNPRVEGNKAI 634

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema1bNP_001163178.1 Sema_1A 55..511 CDD:200498 140/487 (29%)
PSI 510..>537 CDD:214655 12/47 (26%)
sema4fXP_005166611.1 Sema 36..490 CDD:301699 139/496 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11036
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
22.010

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