DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema1b and sema3fa

DIOPT Version :10

Sequence 1:NP_611244.1 Gene:Sema1b / 37007 FlyBaseID:FBgn0016059 Length:770 Species:Drosophila melanogaster
Sequence 2:XP_005166096.1 Gene:sema3fa / 544658 ZFINID:ZDB-GENE-050513-1 Length:801 Species:Danio rerio


Alignment Length:592 Identity:182/592 - (30%)
Similarity:279/592 - (47%) Gaps:77/592 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 AAMLVNAIPMILLITLSGLTIVAGWMPDVKPDLQTKQDKVLAH---FIGNSTDYFKIL--DHNDE 69
            :|:.|::.|:..|...|        :|.|....:..:....||   |:.||||| :||  |.:.:
Zfish    23 SAVSVHSSPLSSLPPAS--------VPRVFLSFKELKSTGTAHHFAFLLNSTDY-RILRMDEDHD 78

  Fly    70 FVLVGAKDVIYNVSLNGL-KEIARLEWHSTDADRELCALKGKH-EWDCHNYLRVYALRPNGEVLL 132
            .:.||:||.|.::.||.: ||...:.|......|..|.|.||. ..:|.|::|:........:.:
Zfish    79 RMYVGSKDYILSLDLNDINKEPLIIHWPVAPQKRTECVLSGKDINGECGNFIRLIEPWNRTHLYV 143

  Fly   133 CGTNSYKPRC----------------------RHYTPVEVSSEEAGSAGHAHAMRYEVSRDVEAQ 175
            |||.:|.|.|                      |.....:.|:.....|...:..|.|..:....:
Zfish   144 CGTGAYNPICTYVDRGQRAQGFLQDQMPRAGGRTSRAADPSASPEPYAPKEYIFRLEPGKVDSGK 208

  Fly   176 GLCPYSPAHNSTYAFADGHLYSATVADFSGGDPLIYR-----ENLRTEQYDLKQLNQPDFVGA-- 233
            |.|||.|..||..|..:|.||:....||.|.|..|:|     ..:||:||:.:.|:.|.||.|  
Zfish   209 GKCPYDPKLNSVSALINGQLYAGVYIDFMGTDSAIFRTLGKHTAMRTDQYNSRWLHDPTFVHAQL 273

  Fly   234 ----IERNGYVL-FFFRELSMEVMNFGKAVYSRVARVCKNDRGGPYSHGKSWTSFLKARLNCSVP 293
                .|:|...| |||||.:.| |.......||:.|:|.||.||.......|::||||||.|||.
Zfish   274 IPDSAEKNDDKLYFFFREKASE-MGQTPMAQSRIGRICLNDDGGHCCLVNKWSTFLKARLICSVT 337

  Fly   294 GE--FPFYFDEIQAISPIVESGSKS-LIYAVFTTSVNAIPGSAVCAFNVDDILAAFDGEFKSQKD 355
            |.  ...:|||::.:.......:|: :||.||:.|.:...|||||.:::.|:...|:|.|..::.
Zfish   338 GSDGIETHFDELRDVYIQKTQDTKNPVIYGVFSVSGSVFKGSAVCVYSMADVRMVFNGPFAHKEG 402

  Fly   356 SQSHWLPVEREQVPKPRPGQC--------VEDSRTLTSIAVNFIKNHPLMEEAVPAVHGRPLLTK 412
            ....|:..: .::|.||||.|        ::.::......:||::.||.|..||..||.|||:.:
Zfish   403 PNYQWVAYQ-GKIPYPRPGTCPGGTFTPNMKSTKDYPDEVINFMRTHPTMFNAVYPVHKRPLVVR 466

  Fly   413 VNLHHRLTAIAVHPQVKSLSGAYYDVIYSGTDDGKVTKFINILSTHPNSTVDRLKT--VVISEMQ 475
            .|:.:..|.|.| .||.:..| .|:|::.|||.|.|.|.|.:    |.   |.|:|  :|:.|::
Zfish   467 TNVDYEFTTITV-DQVAAADG-NYEVLFLGTDRGTVQKVIVL----PR---DDLQTEELVLEEVE 522

  Fly   476 VLPLGTPIRELVISTSKNSLVVVSDGSLVSVPLHHCSHIVD-CLGCLSLQDPICAWDLQTHECKN 539
            |..:.|.|..:.||..:..|.|.|...:..:.||.|....: |..|...:||.||||.::  |..
Zfish   523 VFRVPTSITTMKISPKRQQLYVSSAVGVTHLALHRCDVYGEACADCCLARDPYCAWDGKS--CSR 585

  Fly   540 LATSQHK 546
            .:.:|.:
Zfish   586 YSANQKR 592

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema1bNP_611244.1 Sema_1A 55..511 CDD:200498 161/506 (32%)
PSI 510..>537 CDD:214655 9/27 (33%)
sema3faXP_005166096.1 Sema_3F 59..558 CDD:200515 162/510 (32%)
PSI 557..594 CDD:214655 11/38 (29%)
Ig_Sema3 618..709 CDD:409455
Ig strand A 618..624 CDD:409455
Ig strand B 629..637 CDD:409455
Ig strand C 643..649 CDD:409455
Ig strand C' 651..654 CDD:409455
Ig strand D 664..668 CDD:409455
Ig strand E 671..678 CDD:409455
Ig strand F 684..693 CDD:409455
Ig strand G 696..709 CDD:409455
Blue background indicates that the domain is not in the aligned region.

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